[HTML][HTML] From diversity to complexity: Microbial networks in soils
K Guseva, S Darcy, E Simon, LV Alteio… - Soil Biology and …, 2022 - Elsevier
Network analysis has been used for many years in ecological research to analyze
organismal associations, for example in food webs, plant-plant or plant-animal interactions …
organismal associations, for example in food webs, plant-plant or plant-animal interactions …
[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology
M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …
Using network analysis to explore co-occurrence patterns in soil microbial communities
Exploring large environmental datasets generated by high-throughput DNA sequencing
technologies requires new analytical approaches to move beyond the basic inventory …
technologies requires new analytical approaches to move beyond the basic inventory …
[HTML][HTML] Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil
High-throughput sequencing technologies have recently made it possible to interrogate the
phylogenetic diversity of soils at considerable depth. This ability has led to the development …
phylogenetic diversity of soils at considerable depth. This ability has led to the development …
Network topology reveals high connectance levels and few key microbial genera within soils
M Lupatini, AKA Suleiman, RJS Jacques… - Frontiers in …, 2014 - frontiersin.org
Microbes have a central role in soil global biogeochemical process, yet specific microbe–
microbe relationships are largely unknown. Analytical approaches as network analysis may …
microbe relationships are largely unknown. Analytical approaches as network analysis may …
Continental-scale insights into the soil microbial co-occurrence networks of Australia and their environmental drivers
Soil microbial communities and their interactions play a critical role in shaping the functions
of ecosystems at regional and continental scales. In recent years, co-occurrence network …
of ecosystems at regional and continental scales. In recent years, co-occurrence network …
Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters
AB De Menezes, MT Prendergast‐Miller… - Environmental …, 2015 - Wiley Online Library
Network and multivariate statistical analyses were performed to determine interactions
between bacterial and fungal community terminal restriction length polymorphisms as well …
between bacterial and fungal community terminal restriction length polymorphisms as well …
Linking fungal–bacterial co-occurrences to soil ecosystem function
Highlights•Fungi and bacteria interact in soil, likely affecting their ecosystem
function.•Correlation network analysis is a powerful tool to characterise F: B interactions.•F …
function.•Correlation network analysis is a powerful tool to characterise F: B interactions.•F …
Land-use affects soil microbial co-occurrence networks and their putative functions
Soil microbial interactions are crucial in performing ecosystem functions. The microbial co-
occurrence network could shed a new understanding of microbial functioning as affected by …
occurrence network could shed a new understanding of microbial functioning as affected by …
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
As is well known, soil is a complex ecosystem harboring the most prokaryotic biodiversity on
the Earth. In recent years, the advent of high-throughput sequencing techniques has greatly …
the Earth. In recent years, the advent of high-throughput sequencing techniques has greatly …