scPlant: A versatile framework for single-cell transcriptomic data analysis in plants

S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …

<? sty\usepackage {wasysym}?> scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases

Z He, Y Luo, X Zhou, T Zhu, Y Lan… - Nucleic Acids …, 2024 - academic.oup.com
Recent advancements in single-cell RNA sequencing (scRNA-seq) technology have
enabled the comprehensive profiling of gene expression patterns at the single-cell level …

Single-cell transcriptomics: a high-resolution avenue for plant functional genomics

C Rich-Griffin, A Stechemesser, J Finch, E Lucas… - Trends in plant …, 2020 - cell.com
Plant function is the result of the concerted action of single cells in different tissues.
Advances in RNA-seq technologies and tissue processing allow us now to capture …

Single-cell transcriptome analysis in plants: advances and challenges

R Shaw, X Tian, J Xu - Molecular Plant, 2021 - cell.com
The rapid and enthusiastic adoption of single-cell RNA sequencing (scRNA-seq) has
demonstrated that this technology is far more than just another way to perform transcriptome …

Advances and opportunities in single-cell transcriptomics for plant research

C Seyfferth, J Renema, JR Wendrich… - Annual Review of …, 2021 - annualreviews.org
Single-cell approaches are quickly changing our view on biological systems by increasing
the spatiotemporal resolution of our analyses to the level of the individual cell. The field of …

[HTML][HTML] Plant Single Cell Transcriptome Hub (PsctH): an integrated online tool to explore the plant single‐cell transcriptome landscape

Z Xu, Q Wang, X Zhu, G Wang, Y Qin… - Plant Biotechnology …, 2022 - ncbi.nlm.nih.gov
Plant Single Cell Transcriptome Hub (PsctH): an integrated online tool to explore the plant
single‐cell transcriptome landscape - PMC Back to Top Skip to main content NIH NLM Logo …

The potential of single-cell profiling in plants

I Efroni, KD Birnbaum - Genome biology, 2016 - Springer
Single-cell transcriptomics has been employed in a growing number of animal studies, but
the technique has yet to be widely used in plants. Nonetheless, early studies indicate that …

The promise of single-cell genomics in plants

JL McFaline-Figueroa, C Trapnell… - Current opinion in plant …, 2020 - Elsevier
Single-cell genomic approaches have the potential to revolutionize the study of plant
systems. Here, we highlight newly developed techniques to analyze transcriptomes at single …

Potentials of single-cell genomics in deciphering cellular phenotypes

A Shojaee, M Saavedra, SC Huang - Current opinion in plant biology, 2021 - Elsevier
Single-cell genomics, particularly single-cell transcriptome profiling by RNA sequencing
have transformed the possibilities to relate genes to functions, structures, and eventually …

Plant systems biology at the single-cell level

M Libault, L Pingault, P Zogli, J Schiefelbein - Trends in Plant Science, 2017 - cell.com
Our understanding of plant biology is increasingly being built upon studies using 'omics and
system biology approaches performed at the level of the entire plant, organ, or tissue …