Annotation and visualization of parasite, fungi and arthropod genomes with Companion
As sequencing genomes has become increasingly popular, the need for annotation of the
resulting assemblies is growing. Structural and functional annotation is still challenging as it …
resulting assemblies is growing. Structural and functional annotation is still challenging as it …
[HTML][HTML] Haplotype-resolved chromosome-scale genomes of the Asian and African Savannah Elephants
M Shi, F Chen, SK Sahu, Q Wang, S Yang, Z Wang… - Scientific Data, 2024 - nature.com
The Proboscidea, which includes modern elephants, were once the largest terrestrial
animals among extant species. They suffered mass extinction during the Ice Age. As a …
animals among extant species. They suffered mass extinction during the Ice Age. As a …
[HTML][HTML] The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825
Freshwater mussels of the order Unionida are a global conservation concern. Species of this
group are strictly freshwater, sessile, slow-growing animals and, extremely sensitive to …
group are strictly freshwater, sessile, slow-growing animals and, extremely sensitive to …
[HTML][HTML] High quality genomes produced from single MinION flow cells clarify polyploid and demographic histories of critically endangered Fraxinus (ash) species
SJ Fleck, C Tomlin, FA da Silva Coelho… - Communications …, 2024 - nature.com
With populations of threatened and endangered species declining worldwide, efforts are
being made to generate high quality genomic records of these species before they are lost …
being made to generate high quality genomic records of these species before they are lost …
[HTML][HTML] Multi-omics resources for the Australian southern stuttering frog (Mixophyes australis) reveal assorted antimicrobial peptides
The number of genome-level resources for non-model species continues to rapidly expand.
However, frog species remain underrepresented, with up to 90% of frog genera having no …
However, frog species remain underrepresented, with up to 90% of frog genera having no …
A data‐driven genome annotation approach for cassava
S Chenna, M Ivanov, TK Nielsen, K Chalenko… - The Plant …, 2024 - Wiley Online Library
Genome annotation files play a critical role in dictating the quality of downstream analyses
by providing essential predictions for gene positions and structures. These files are pivotal in …
by providing essential predictions for gene positions and structures. These files are pivotal in …
The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental …
S Zhu, XF Wei, YX Lu, DW Zhang, ZF Wang… - Horticulture …, 2024 - academic.oup.com
Sinojackia Hu represents the first woody genus described by Chinese botanists, with all
species classified as endangered ornamental plants endemic to China. Their characteristic …
species classified as endangered ornamental plants endemic to China. Their characteristic …
Genomic evidence for the widespread presence of GH45 cellulases among soil invertebrates
Lignocellulose is a major component of vascular plant biomass. Its decomposition is crucial
for the terrestrial carbon cycle. Microorganisms are considered primary decomposers, but …
for the terrestrial carbon cycle. Microorganisms are considered primary decomposers, but …
An epigenetic toolbox for conservation biologists
A Balard, M Baltazar‐Soares… - Evolutionary …, 2024 - Wiley Online Library
Ongoing climatic shifts and increasing anthropogenic pressures demand an efficient
delineation of conservation units and accurate predictions of populations' resilience and …
delineation of conservation units and accurate predictions of populations' resilience and …
[HTML][HTML] Genome composition and GC content influence loci distribution in reduced representation genomic studies
Background Genomic architecture is a key evolutionary trait for living organisms. Due to
multiple complex adaptive and neutral forces which impose evolutionary pressures on …
multiple complex adaptive and neutral forces which impose evolutionary pressures on …