Annotation and visualization of parasite, fungi and arthropod genomes with Companion

W Haese-Hill, K Crouch, TD Otto - Nucleic Acids Research, 2024 - academic.oup.com
As sequencing genomes has become increasingly popular, the need for annotation of the
resulting assemblies is growing. Structural and functional annotation is still challenging as it …

[HTML][HTML] Haplotype-resolved chromosome-scale genomes of the Asian and African Savannah Elephants

M Shi, F Chen, SK Sahu, Q Wang, S Yang, Z Wang… - Scientific Data, 2024 - nature.com
The Proboscidea, which includes modern elephants, were once the largest terrestrial
animals among extant species. They suffered mass extinction during the Ice Age. As a …

[HTML][HTML] The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825

A Gomes-dos-Santos, E Fonseca, N Riccardi… - Scientific Data, 2024 - nature.com
Freshwater mussels of the order Unionida are a global conservation concern. Species of this
group are strictly freshwater, sessile, slow-growing animals and, extremely sensitive to …

[HTML][HTML] High quality genomes produced from single MinION flow cells clarify polyploid and demographic histories of critically endangered Fraxinus (ash) species

SJ Fleck, C Tomlin, FA da Silva Coelho… - Communications …, 2024 - nature.com
With populations of threatened and endangered species declining worldwide, efforts are
being made to generate high quality genomic records of these species before they are lost …

[HTML][HTML] Multi-omics resources for the Australian southern stuttering frog (Mixophyes australis) reveal assorted antimicrobial peptides

S Tang, E Peel, K Belov, CJ Hogg, KA Farquharson - Scientific Reports, 2024 - nature.com
The number of genome-level resources for non-model species continues to rapidly expand.
However, frog species remain underrepresented, with up to 90% of frog genera having no …

A data‐driven genome annotation approach for cassava

S Chenna, M Ivanov, TK Nielsen, K Chalenko… - The Plant …, 2024 - Wiley Online Library
Genome annotation files play a critical role in dictating the quality of downstream analyses
by providing essential predictions for gene positions and structures. These files are pivotal in …

The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental …

S Zhu, XF Wei, YX Lu, DW Zhang, ZF Wang… - Horticulture …, 2024 - academic.oup.com
Sinojackia Hu represents the first woody genus described by Chinese botanists, with all
species classified as endangered ornamental plants endemic to China. Their characteristic …

Genomic evidence for the widespread presence of GH45 cellulases among soil invertebrates

H Muelbaier, F Arthen, G Collins, T Hickler… - Molecular …, 2024 - Wiley Online Library
Lignocellulose is a major component of vascular plant biomass. Its decomposition is crucial
for the terrestrial carbon cycle. Microorganisms are considered primary decomposers, but …

An epigenetic toolbox for conservation biologists

A Balard, M Baltazar‐Soares… - Evolutionary …, 2024 - Wiley Online Library
Ongoing climatic shifts and increasing anthropogenic pressures demand an efficient
delineation of conservation units and accurate predictions of populations' resilience and …

[HTML][HTML] Genome composition and GC content influence loci distribution in reduced representation genomic studies

C Galià-Camps, C Pegueroles, X Turon, C Carreras… - BMC genomics, 2024 - Springer
Background Genomic architecture is a key evolutionary trait for living organisms. Due to
multiple complex adaptive and neutral forces which impose evolutionary pressures on …