Genome composition and GC content influence loci distribution in reduced representation genomic studies

C Galià-Camps, C Pegueroles, X Turon, C Carreras… - BMC genomics, 2024 - Springer
Background Genomic architecture is a key evolutionary trait for living organisms. Due to
multiple complex adaptive and neutral forces which impose evolutionary pressures on …

A novel target‐enriched multilocus assay for sponges (Porifera): Red Sea Haplosclerida (Demospongiae) as a test case

J van der Sprong, NJ de Voogd… - Molecular Ecology …, 2024 - Wiley Online Library
With declining biodiversity worldwide, a better understanding of species diversity and their
relationships is imperative for conservation and management efforts. Marine sponges are …

Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae

EE Armstrong, KL Bissell, HS Fatima… - G3: Genes …, 2024 - academic.oup.com
Reference genome assemblies have been created from multiple lineages within the
Canidae family; however, despite its phylogenetic relevance as a basal genus within the …

A novel target‐enriched multilocus assay for sponges (Porifera): Red Sea Haplosclerida (Demospongiae) as a test case

J Sprong, NJ Voogd… - Molecular …, 2024 - epub.ub.uni-muenchen.de
With declining biodiversity worldwide, a better understanding of species diversity and their
relationships is imperative for conservation and management efforts. Marine sponges are …

Toward genome assemblies for all marine vertebrates: current landscape and challenges

E de Jong, L Parata, PE Bayer, S Corrigan… - …, 2024 - academic.oup.com
Marine vertebrate biodiversity is fundamental to ocean ecosystem health but is threatened
by climate change, overharvesting, and habitat degradation. High-quality reference …

Sensommatic: an efficient pipeline to mine and predict sensory receptor genes in the era of reference-quality genomes

L Ryan, C Lawless, GM Hughes - Bioinformatics, 2024 - academic.oup.com
Sensory receptor gene families have undergone extensive expansion and loss across
vertebrate evolution, leading to significant variation in receptor counts between species …

Phenotype Variation in Niphargus (Amphipoda: Niphargidae): Possible Explanations and Open Challenges

C Fišer, E Premate - Diversity, 2024 - mdpi.com
Understanding phenotype variation is among the central topics in biology. We revise and
reanalyze studies of the amphipod genus Niphargus to confront two potential mechanisms …

Nuclear environmental DNA resolves fine-scale population genetic structure in an aquatic habitat

Z Liu, MA Kishe, NP Gabagambi, AH Shechonge… - Iscience, 2024 - cell.com
There is considerable potential for nuclear genomic material in environmental DNA (eDNA)
to inform us of population genetic structure within aquatic species. We tested if nuclear …

A rapid approach for sex assignment by RAD-seq using a reference genome

DM Peralta, JI Túnez, UE Rodríguez Cruz… - Plos one, 2024 - journals.plos.org
Sex identification is a common objective in molecular ecology. While many vertebrates
display sexual dimorphism, determining the sex can be challenging in certain situations …

[HTML][HTML] Genomic insights into the conservation status of the Idle Crayfish Austropotamobius bihariensis Pârvulescu, 2019: low genetic diversity in the endemic …

L Bonassin, L Pârvulescu, LL Boštjančić… - BMC Ecology and …, 2024 - ncbi.nlm.nih.gov
Background Biodiversity in freshwater ecosystems is declining due to an increased
anthropogenic footprint. Freshwater crayfish are keystone species in freshwater ecosystems …