Tools and techniques for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)/COVID-19 detection

SH Safiabadi Tali, JJ LeBlanc, Z Sadiq… - Clinical microbiology …, 2021 - Am Soc Microbiol
SUMMARY The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute
respiratory disease coronavirus 2 (SARS-CoV-2), has led to millions of confirmed cases and …

[HTML][HTML] Next-generation sequencing technology: current trends and advancements

H Satam, K Joshi, U Mangrolia, S Waghoo, G Zaidi… - Biology, 2023 - mdpi.com
Simple Summary Next-generation sequencing (NGS) is a powerful tool used in genomics
research. NGS can sequence millions of DNA fragments at once, providing detailed …

[HTML][HTML] SARS-CoV-2 B. 1.617. 2 Delta variant replication and immune evasion

P Mlcochova, SA Kemp, MS Dhar, G Papa, B Meng… - Nature, 2021 - nature.com
Abstract The B. 1.617. 2 (Delta) variant of severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) was first identified in the state of Maharashtra in late 2020 and spread …

Two years into the COVID-19 pandemic: lessons learned

SJR da Silva, JCF do Nascimento… - ACS infectious …, 2022 - ACS Publications
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly transmissible
and virulent human-infecting coronavirus that emerged in late December 2019 in Wuhan …

Effectiveness of ChAdOx1 nCoV-19 vaccine against SARS-CoV-2 infection during the delta (B. 1.617. 2) variant surge in India: a test-negative, case-control study and …

R Thiruvengadam, A Awasthi, G Medigeshi… - The Lancet Infectious …, 2022 - thelancet.com
Background SARS-CoV-2 variants of concern (VOCs) have threatened COVID-19 vaccine
effectiveness. We aimed to assess the effectiveness of the ChAdOx1 nCoV-19 vaccine …

[HTML][HTML] Saliva is more sensitive than nasopharyngeal or nasal swabs for diagnosis of asymptomatic and mild COVID-19 infection

AKJ Teo, Y Choudhury, IB Tan, CY Cher, SH Chew… - Scientific reports, 2021 - nature.com
We aimed to test the sensitivity of naso-oropharyngeal saliva and self-administered nasal
(SN) swab compared to nasopharyngeal (NP) swab for COVID-19 testing in a large cohort of …

[HTML][HTML] Rapid and accurate nucleobase detection using FnCas9 and its application in COVID-19 diagnosis

M Azhar, R Phutela, M Kumar, AH Ansari… - Biosensors and …, 2021 - Elsevier
Rapid detection of DNA/RNA pathogenic sequences or variants through point-of-care
diagnostics is valuable for accelerated clinical prognosis, as witnessed during the recent …

[HTML][HTML] SARS-CoV-2 B. 1.617. 2 Delta variant replication, sensitivity to neutralising antibodies and vaccine breakthrough

P Mlcochova, S Kemp, MS Dhar, G Papa, B Meng… - 2021 - europepmc.org
Abstract The SARS-CoV-2 B. 1.617. 2 (Delta) variant was first identified in the state of
Maharashtra in late 2020 and spread throughout India, outcompeting pre-existing lineages …

GenStore: a high-performance in-storage processing system for genome sequence analysis

N Mansouri Ghiasi, J Park, H Mustafa, J Kim… - Proceedings of the 27th …, 2022 - dl.acm.org
Read mapping is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …

[HTML][HTML] Predominance of delta variant among the COVID-19 vaccinated and unvaccinated individuals, India, May 2021

JWV Thangaraj, P Yadav, CPG Kumar… - The Journal of …, 2022 - ncbi.nlm.nih.gov
Stang and coworkers have recently reported in the Journal that “RT-PCR test results as gold
standard for assessing and controlling infectiousness fail”[1]. The authors analyzed two …