Pseudomonas genomes: diverse and adaptable

MW Silby, C Winstanley, SAC Godfrey… - FEMS microbiology …, 2011 - academic.oup.com
Members of the genus Pseudomonas inhabit a wide variety of environments, which is
reflected in their versatile metabolic capacity and broad potential for adaptation to fluctuating …

Gradients in gene essentiality reshape antibacterial research

AM Hogan, ST Cardona - FEMS Microbiology Reviews, 2022 - academic.oup.com
Essential genes encode the processes that are necessary for life. Until recently, commonly
applied binary classifications left no space between essential and non-essential genes. In …

Pseudomonas aeruginosa Genomic Structure and Diversity

J Klockgether, N Cramer, L Wiehlmann… - Frontiers in …, 2011 - frontiersin.org
The Pseudomonas aeruginosa genome (G+ C content 65–67%, size 5.5–7 Mbp) is made up
of a single circular chromosome and a variable number of plasmids. Sequencing of …

Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes

H Luo, F Gao, Y Lin - Scientific reports, 2015 - nature.com
Essential genes are thought to be critical for the survival of the organisms under certain
circumstances and the natural selection acting on essential genes is expected to be stricter …

Typing and characterization of bacteria using bottom-up tandem mass spectrometry proteomics

F Boulund, R Karlsson, L Gonzales-Siles… - Molecular & Cellular …, 2017 - ASBMB
Methods for rapid and reliable microbial identification are essential in modern healthcare.
The ability to detect and correctly identify pathogenic species and their resistance phenotype …

The Pseudomonas aeruginosa transcriptional landscape is shaped by environmental heterogeneity and genetic variation

A Dötsch, M Schniederjans, A Khaledi, K Hornischer… - MBio, 2015 - Am Soc Microbiol
Phenotypic variability among bacteria depends on gene expression in response to different
environments, and it also reflects differences in genomic structure. In this study, we analyzed …

BACTOME—a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates

K Hornischer, A Khaledi, S Pohl… - Nucleic acids …, 2019 - academic.oup.com
Extensive use of next-generation sequencing (NGS) for pathogen profiling has the potential
to transform our understanding of how genomic plasticity contributes to phenotypic …

From environment to man: genome evolution and adaptation of human opportunistic bacterial pathogens

F Aujoulat, F Roger, A Bourdier, A Lotthé, B Lamy… - Genes, 2012 - mdpi.com
Environment is recognized as a huge reservoir for bacterial species and a source of human
pathogens. Some environmental bacteria have an extraordinary range of activities that …

[HTML][HTML] Overview of Multidrug-Resistant Pseudomonas aeruginosa and Novel Therapeutic Approaches

M Porras-Gómez, J Vega-Baudrit - Journal of Biomaterials and …, 2012 - scirp.org
Gram-negative bacilli Pseudomonas aeruginosa is an important pathogen in hospitalized
patients, contributing to their morbidity and mortality due to its multiple resistance …

Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea

AL Grazziotin, NM Vidal, TM Venancio - The FEBS journal, 2015 - Wiley Online Library
Identification of essential genes is critical to understanding the physiology of a species,
proposing novel drug targets and uncovering minimal gene sets required for life. Although …