Regulation of single-strand annealing and its role in genome maintenance

R Bhargava, DO Onyango, JM Stark - Trends in Genetics, 2016 - cell.com
Single-strand annealing (SSA) is a DNA double-strand break (DSB) repair pathway that
uses homologous repeats to bridge DSB ends. SSA involving repeats that flank a single …

Alternative end-joining repair pathways are the ultimate backup for abrogated classical non-homologous end-joining and homologous recombination repair …

G Iliakis, T Murmann, A Soni - Mutation Research/Genetic Toxicology and …, 2015 - Elsevier
DNA double strand breaks (DSB) are the most deleterious lesions for the integrity of the
genome, as their misrepair can lead to the formation of chromosome translocations. Cells …

[HTML][HTML] Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders

D Porubsky, W Höps, H Ashraf, PH Hsieh… - Cell, 2022 - cell.com
Unlike copy number variants (CNVs), inversions remain an underexplored genetic variation
class. By integrating multiple genomic technologies, we discover 729 inversions in 41 …

Frequency and mechanisms of LINE-1 retrotransposon insertions at CRISPR/Cas9 sites

J Tao, Q Wang, C Mendez-Dorantes, KH Burns… - Nature …, 2022 - nature.com
CRISPR/Cas9-based genome editing has revolutionized experimental molecular biology
and entered the clinical world for targeted gene therapy. Identifying DNA modifications …

LINE-1 retrotransposition and its deregulation in cancers: implications for therapeutic opportunities

C Mendez-Dorantes, KH Burns - Genes & development, 2023 - genesdev.cshlp.org
Abstract Long interspersed element 1 (LINE-1) is the only protein-coding transposon that is
active in humans. LINE-1 propagates in the genome using RNA intermediates via …

Heavy metal exposure influences double strand break DNA repair outcomes

ME Morales, RS Derbes, CM Ade, JC Ortego, J Stark… - PloS one, 2016 - journals.plos.org
Heavy metals such as cadmium, arsenic and nickel are classified as carcinogens. Although
the precise mechanism of carcinogenesis is undefined, heavy metal exposure can …

Transposable element-mediated rearrangements are prevalent in human genomes

P Balachandran, IA Walawalkar, JI Flores… - Nature …, 2022 - nature.com
Transposable elements constitute about half of human genomes, and their role in
generating human variation through retrotransposition is broadly studied and appreciated …

Transposable elements and human diseases: mechanisms and implication in the response to environmental pollutants

B Chénais - International journal of molecular sciences, 2022 - mdpi.com
Transposable elements (TEs) are recognized as major players in genome plasticity and
evolution. The high abundance of TEs in the human genome, especially the Alu and Long …

Do DNA double-strand breaks drive aging?

RR White, J Vijg - Molecular cell, 2016 - cell.com
DNA double-strand breaks (DSBs) are rare, but highly toxic, lesions requiring orchestrated
and conserved machinery to prevent adverse consequences, such as cell death and cancer …

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements

X Song, CR Beck, R Du, IM Campbell… - Genome …, 2018 - genome.cshlp.org
Alu elements, the short interspersed element numbering more than 1 million copies per
human genome, can mediate the formation of copy number variants (CNVs) between …