Label-free visual proteomics: Coupling MS-and EM-based approaches in structural biology

O Klykov, M Kopylov, B Carragher, AJR Heck, AJ Noble… - Molecular cell, 2022 - cell.com
Combining diverse experimental structural and interactomic methods allows for the
construction of comprehensible molecular encyclopedias of biological systems. Typically …

Allotype-specific glycosylation and cellular localization of human leukocyte antigen class I proteins

M Hoek, LC Demmers, W Wu… - Journal of proteome …, 2021 - ACS Publications
Presentation of antigens by human leukocyte antigen (HLA) complexes at the cell surface is
a key process in the immune response. The α-chain, containing the peptide-binding groove …

A Glycosidic‐Bond‐Based Mass‐Spectrometry‐Cleavable Cross‐linker Enables In Vivo Cross‐linking for Protein Complex Analysis

J Chen, Q Zhao, H Gao, L Zhao, H Chu… - Angewandte Chemie …, 2023 - Wiley Online Library
Chemical cross‐linking mass spectrometry (CXMS) has emerged as a powerful technology
to analyze protein complexes. However, the progress of in vivo CXMS studies has been …

Characterization of protein complexes in extracellular vesicles by intact extracellular vesicle crosslinking mass spectrometry (iEVXL)

J Bauzá‐Martinez, G Armony… - Journal of Extracellular …, 2022 - Wiley Online Library
Extracellular vesicles (EVs) are blood‐borne messengers that coordinate signalling
between different tissues and organs in the body. The specificity of such crosstalk is …

[HTML][HTML] Homotypic and heterotypic in cis associations of MHC class I molecules at the cell surface

FM Ruggiero, S Springer - Current research in immunology, 2022 - Elsevier
Through the presentation of peptide antigens to cytotoxic T lymphocytes, major
histocompatibility complex (MHC) class I molecules mediate the adaptive immune response …

Dissociation of β2m from MHC class I triggers formation of noncovalent transient heavy chain dimers

C Dirscherl, S Löchte, Z Hein, JD Kopicki… - Journal of cell …, 2022 - journals.biologists.com
At the plasma membrane of mammalian cells, major histocompatibility complex class I
molecules (MHC-I) present antigenic peptides to cytotoxic T cells. Following the loss of the …

HLA DQ protein changes the cell surface distribution pattern of HLA proteins as monitored by Förster resonance energy transfer and high‐resolution electron …

J Kormos, AJ Veres, L Imre, L Mátyus, S Benkő… - Cytometry Part …, 2023 - Wiley Online Library
Peptide presentation by MHC class I and MHC class II molecules plays important roles in the
regulation of the immune response. One factor in these displays is the density of antigen …

Hybrid structural modeling of alloantibody binding to human leukocyte antigen with rapid and reproducible cross-linking mass spectrometry

Z Ser, Y Gu, J Yap, YT Lim, SM Wang, M Hamidinia… - Cell Reports …, 2023 - cell.com
Alloantibody recognition of donor human leukocyte antigen (HLA) is associated with poor
clinical transplantation outcomes. However, the molecular and structural basis for the …

Advances in the field of micro-and nanotechnologies applied to extracellular vesicle research: Take-home message from ISEV2021

S Picciolini, F Rodà, M Bedoni, A Gualerzi - Micromachines, 2021 - mdpi.com
Extracellular Vesicles (EVs) are naturally secreted nanoparticles with a plethora of functions
in the human body and remarkable potential as diagnostic and therapeutic tools. Starting …

[HTML][HTML] Identifying and characterising Thrap3, Bclaf1 and Erh interactions using cross-linking mass spectrometry

L Shcherbakova, M Pardo, T Roumeliotis… - Wellcome Open …, 2021 - ncbi.nlm.nih.gov
Background: Cross-linking mass spectrometry (XL-MS) is a powerful technology capable of
yielding structural insights across the complex cellular protein interaction network. However …