[HTML][HTML] Construct design for CRISPR/Cas-based genome editing in plants

MM Hassan, Y Zhang, G Yuan, K De, JG Chen… - Trends in Plant …, 2021 - cell.com
CRISPR construct design is a key step in the practice of genome editing, which includes
identification of appropriate Cas proteins, design and selection of guide RNAs (gRNAs), and …

CRISPR techniques and potential for the detection and discrimination of SARS-CoV-2 variants of concern

H Xiao, J Hu, C Huang, W Feng, Y Liu… - TrAC Trends in …, 2023 - Elsevier
The continuing evolution of the SARS-CoV-2 virus has led to the emergence of many
variants, including variants of concern (VOCs). CRISPR-Cas systems have been used to …

[HTML][HTML] Structural basis for Cas9 off-target activity

M Pacesa, CH Lin, A Cléry, A Saha, PR Arantes… - Cell, 2022 - cell.com
The target DNA specificity of the CRISPR-associated genome editor nuclease Cas9 is
determined by complementarity to a 20-nucleotide segment in its guide RNA. However …

In vivo imaging of mitochondrial DNA mutations using an integrated nano Cas12a sensor

Y Li, Y Wu, R Xu, J Guo, F Quan, Y Zhang… - Nature …, 2023 - nature.com
Mutations in mitochondrial DNA (mtDNA) play critical roles in many human diseases. In vivo
visualization of cells bearing mtDNA mutations is important for resolving the complexity of …

CRISPR-Cas12a has widespread off-target and dsDNA-nicking effects

K Murugan, AS Seetharam, AJ Severin… - Journal of Biological …, 2020 - ASBMB
Cas12a (Cpf1) is an RNA-guided endonuclease in the bacterial type VA CRISPR-Cas anti-
phage immune system that can be repurposed for genome editing. Cas12a can bind and cut …

Kinetic analysis of Cas12a and Cas13a RNA-Guided nucleases for development of improved CRISPR-Based diagnostics

EA Nalefski, N Patel, PJY Leung, Z Islam, RM Kooistra… - Iscience, 2021 - cell.com
Bacterial CRISPR systems provide acquired immunity against invading nucleic acids by
activating RNA-programmable RNases and DNases. Cas13a and Cas12a enzymes bound …

Systematically attenuating DNA targeting enables CRISPR-driven editing in bacteria

D Collias, E Vialetto, J Yu, K Co, ÉH Almási… - Nature …, 2023 - nature.com
Bacterial genome editing commonly relies on chromosomal cleavage with Cas nucleases to
counter-select against unedited cells. However, editing normally requires efficient …

CRISPR/Cas technology in pig-to-human xenotransplantation research

N Ryczek, M Hryhorowicz, J Zeyland, D Lipiński… - International journal of …, 2021 - mdpi.com
CRISPR/Cas (clustered regularly interspaced short palindromic repeats linked to Cas
nuclease) technology has revolutionized many aspects of genetic engineering research …

CRISPR-Cas3-based diagnostics for SARS-CoV-2 and influenza virus

K Yoshimi, K Takeshita, S Yamayoshi, S Shibumura… - Iscience, 2022 - cell.com
CRISPR-based diagnostics (CRISPR-dx), including the Cas12-based DETECTR and Cas13-
based SHERLOCK Class 2 CRISPRs, have been used to detect the presence of DNA or …

Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin

I Strohkendl, FA Saifuddin, BA Gibson, MK Rosen… - Science …, 2021 - science.org
Genome engineering nucleases must access chromatinized DNA. Here, we investigate how
AsCas12a cleaves DNA within human nucleosomes and phase-condensed nucleosome …