Qsar in natural non-peptidic food-related compounds: current status and future perspective

Y Zhao, Y Xia, Y Yu, G Liang - Trends in Food Science & Technology, 2023 - Elsevier
Background Bioactive factors in functional foods play a crucial role in performing their
specific functions. These factors have their own specific physical and chemical properties …

Machine learning, artificial intelligence, and data science breaking into drug design and neglected diseases

J Peña‐Guerrero, PA Nguewa… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Abstract Machine learning (ML) is becoming capable of transforming biomolecular
interaction description and calculation, promising an impact on molecular and drug design …

Leveraging high-throughput screening data, deep neural networks, and conditional generative adversarial networks to advance predictive toxicology

AJ Green, MJ Mohlenkamp, J Das… - PLOS Computational …, 2021 - journals.plos.org
There are currently 85,000 chemicals registered with the Environmental Protection Agency
(EPA) under the Toxic Substances Control Act, but only a small fraction have measured …

StackPR is a new computational approach for large-scale identification of progesterone receptor antagonists using the stacking strategy

N Schaduangrat, N Anuwongcharoen, MA Moni… - Scientific Reports, 2022 - nature.com
Progesterone receptors (PRs) are implicated in various cancers since their
presence/absence can determine clinical outcomes. The overstimulation of progesterone …

Deep Learning in Environmental Toxicology: Current Progress and Open Challenges

H Tan, J Jin, C Fang, Y Zhang, B Chang… - ACS ES&T …, 2023 - ACS Publications
Ubiquitous chemicals in the environment may pose a threat to human health and the
ecosystem, so comprehensive toxicity information must be obtained. Due to the inability of …

molecular image-based prediction models of nuclear receptor agonists and antagonists using the deepsnap-deep learning approach with the Tox21 10K library

Y Matsuzaka, Y Uesawa - Molecules, 2020 - mdpi.com
The interaction of nuclear receptors (NRs) with chemical compounds can cause
dysregulation of endocrine signaling pathways, leading to adverse health outcomes due to …

Novel QSAR approach for a regression model of clearance that combines DeepSnap-deep learning and conventional machine learning

H Mamada, Y Nomura, Y Uesawa - ACS omega, 2022 - ACS Publications
The toxicity, absorption, distribution, metabolism, and excretion properties of some targets
are difficult to predict by quantitative structure–activity relationship analysis. Therefore, there …

Prediction model of clearance by a Novel quantitative structure–Activity relationship approach, combination deepsnap-deep learning and conventional machine …

H Mamada, Y Nomura, Y Uesawa - ACS omega, 2021 - ACS Publications
Some targets predicted by machine learning (ML) in drug discovery remain a challenge
because of poor prediction. In this study, a new prediction model was developed and rat …

Ensemble Learning, Deep Learning-Based and Molecular Descriptor-Based Quantitative Structure–Activity Relationships

Y Matsuzaka, Y Uesawa - Molecules, 2023 - mdpi.com
A deep learning-based quantitative structure–activity relationship analysis, namely the
molecular image-based DeepSNAP–deep learning method, can successfully and …

Prediction model of aryl hydrocarbon receptor activation by a novel qsar approach, deepsnap–deep learning

Y Matsuzaka, T Hosaka, A Ogaito, K Yoshinari… - Molecules, 2020 - mdpi.com
The aryl hydrocarbon receptor (AhR) is a ligand-dependent transcription factor that senses
environmental exogenous and endogenous ligands or xenobiotic chemicals. In particular …