Applications of the soil, plant and rumen microbiomes in pastoral agriculture

GT Attwood, SA Wakelin, SC Leahy, S Rowe… - Frontiers in …, 2019 - frontiersin.org
The production of dairy, meat, and fiber by ruminant animals relies on the biological
processes occurring in soils, forage plants, and the animals' rumens. Each of these …

Crop genomic selection with deep learning and environmental data: A survey

S Jubair, M Domaratzki - Frontiers in Artificial Intelligence, 2023 - frontiersin.org
Machine learning techniques for crop genomic selections, especially for single-environment
plants, are well-developed. These machine learning models, which use dense genome …

Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding

N Wang, Y Yuan, H Wang, D Yu, Y Liu, A Zhang… - Scientific reports, 2020 - nature.com
Abstract Genotyping-by-Sequencing (GBS) is a low-cost, high-throughput genotyping
method that relies on restriction enzymes to reduce genome complexity. GBS is being widely …

Sorghum Association Panel whole‐genome sequencing establishes cornerstone resource for dissecting genomic diversity

JL Boatwright, S Sapkota, H Jin, JC Schnable… - The Plant …, 2022 - Wiley Online Library
Association mapping panels represent foundational resources for understanding the genetic
basis of phenotypic diversity and serve to advance plant breeding by exploring genetic …

Genomic selection in preliminary yield trials in a winter wheat breeding program

V Belamkar, MJ Guttieri, W Hussain… - G3: Genes …, 2018 - academic.oup.com
Genomic prediction (GP) is now routinely performed in crop plants to predict unobserved
phenotypes. The use of predicted phenotypes to make selections is an active area of …

Seed Transmission of Epichloë Endophytes in Lolium perenne Is Heavily Influenced by Host Genetics

M Gagic, MJ Faville, W Zhang, NT Forester… - Frontiers in plant …, 2018 - frontiersin.org
Vertical transmission of symbiotic Epichloë endophytes from host grasses into progeny seed
is the primary mechanism by which the next generation of plants is colonized. This process …

Multi-trait genomic prediction improves predictive ability for dry matter yield and water-soluble carbohydrates in perennial ryegrass

SK Arojju, M Cao, M Trolove, BA Barrett… - Frontiers in Plant …, 2020 - frontiersin.org
In perennial ryegrass (Lolium perenne L), annual and seasonal dry matter yield (DMY) and
nutritive quality of herbage are high-priority traits targeted for improvement through selective …

Adaptation of landrace and variety germplasm and selection strategies for lucerne in the Mediterranean basin

P Annicchiarico, L Pecetti, A Abdelguerfi… - Field Crops …, 2011 - Elsevier
Lucerne (Medicago sativa L.) can enhance the economic and environmental sustainability of
crop-livestock systems in the western Mediterranean basin, but requires improved …

Boosting Genetic Gain in Allogamous Crops via Speed Breeding and Genomic Selection

A Jighly, Z Lin, LW Pembleton, NOI Cogan… - Frontiers in plant …, 2019 - frontiersin.org
Breeding schemes that utilize modern breeding methods like genomic selection (GS) and
speed breeding (SB) have the potential to accelerate genetic gain for different crops. We …

Parentage Analysis in Giant Grouper (Epinephelus lanceolatus) Using Microsatellite and SNP Markers from Genotyping-by-Sequencing Data

Z Weng, Y Yang, X Wang, L Wu, S Hua, H Zhang… - Genes, 2021 - mdpi.com
Pedigree information is necessary for the maintenance of diversity for wild and captive
populations. Accurate pedigree is determined by molecular marker-based parentage …