Lessons from the deep: mechanisms behind diversification of eukaryotic protein complexes

G Prokopchuk, A Butenko, JB Dacks… - Biological …, 2023 - Wiley Online Library
Genetic variation is the major mechanism behind adaptation and evolutionary change. As
most proteins operate through interactions with other proteins, changes in protein complex …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

[HTML][HTML] Histones with an unconventional DNA-binding mode in vitro are major chromatin constituents in the bacterium Bdellovibrio bacteriovorus

A Hocher, SP Laursen, P Radford, J Tyson… - Nature …, 2023 - nature.com
Histone proteins bind DNA and organize the genomes of eukaryotes and most archaea,
whereas bacteria rely on different nucleoid-associated proteins. Homology searches have …

Archaeal chromatin 'slinkies' are inherently dynamic complexes with deflected DNA wrapping pathways

S Bowerman, J Wereszczynski, K Luger - Elife, 2021 - elifesciences.org
Eukaryotes and many archaea package their DNA with histones. While the four eukaryotic
histones wrap~ 147 DNA base pairs into nucleosomes, archaeal histones form 'nucleosome …

[HTML][HTML] The critical roles of histone deacetylase 3 in the pathogenesis of solid organ injury

L Ning, X Rui, W Bo, G Qing - Cell death & disease, 2021 - nature.com
Abstract Histone deacetylase 3 (HDAC3) plays a crucial role in chromatin remodeling,
which, in turn, regulates gene transcription. Hence, HDAC3 has been implicated in various …

[HTML][HTML] Epigenetic regulation of nuclear processes in fungal plant pathogens

HM Kramer, DE Cook, MF Seidl… - PLoS Pathogens, 2023 - journals.plos.org
Through the association of protein complexes to DNA, the eukaryotic nuclear genome is
broadly organized into open euchromatin that is accessible for enzymes acting on DNA and …

An archaeal histone-like protein regulates gene expression in response to salt stress

S Sakrikar, AK Schmid - Nucleic acids research, 2021 - academic.oup.com
Histones, ubiquitous in eukaryotes as DNA-packing proteins, find their evolutionary origins
in archaea. Unlike the characterized histone proteins of a number of methanogenic and …

[HTML][HTML] Specific DNA binding of archaeal histones HMfA and HMfB

AM Erkelens, B Henneman, RA Van Der Valk… - Frontiers in …, 2023 - frontiersin.org
In archaea, histones play a role in genome compaction and are involved in transcription
regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind …

[HTML][HTML] DNA-bridging by an archaeal histone variant via a unique tetramerisation interface

S Ofer, F Blombach, AM Erkelens, D Barker… - Communications …, 2023 - nature.com
In eukaryotes, histone paralogues form obligate heterodimers such as H3/H4 and H2A/H2B
that assemble into octameric nucleosome particles. Archaeal histones are dimeric and …

Archaea: the final frontier of chromatin

SP Laursen, S Bowerman, K Luger - Journal of molecular biology, 2021 - Elsevier
The three domains of life employ various strategies to organize their genomes. Archaea
utilize features similar to those found in both eukaryotic and bacterial chromatin to organize …