An emerging role of chromatin-interacting RNA-binding proteins in transcription regulation

X Du, R Xiao - Essays in Biochemistry, 2020 - portlandpress.com
Transcription factors (TFs) are well-established key factors orchestrating gene transcription,
and RNA-binding proteins (RBPs) are mainly thought to participate in post-transcriptional …

Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate

EA Moehle, H Braberg, NJ Krogan, C Guthrie - RNA biology, 2014 - Taylor & Francis
Control of pre-mRNA splicing is a critical part of the eukaryotic gene expression process.
Extensive evidence indicates that transcription and splicing are spatiotemporally …

Where splicing joins chromatin

J Hnilicová, D Staněk - Nucleus, 2011 - Taylor & Francis
There are numerous data suggesting that two key steps in gene expression-transcription
and splicing influence each other closely. For a long time it was known that chromatin …

Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing

MJ Moore, EM Schwartzfarb, PA Silver, CY Michael - Molecular cell, 2006 - cell.com
The splicing machinery associates with genes to facilitate efficient cotranscriptional mRNA
processing. We have mapped these associations by genome localization analysis to …

Subgenic Pol II interactomes identify region‐specific transcription elongation regulators

KM Harlen, LS Churchman - Molecular Systems Biology, 2017 - embopress.org
Transcription, RNA processing, and chromatin‐related factors all interact with RNA
polymerase II (Pol II) to ensure proper timing and coordination of transcription and co …

Pre-mRNA splicing in the nuclear landscape

TJ Carrocci, KM Neugebauer - Cold Spring Harbor symposia …, 2019 - symposium.cshlp.org
Eukaryotic gene expression requires the cumulative activity of multiple molecular machines
to synthesize and process newly transcribed pre-messenger RNA. Introns, the noncoding …

Coregulators: transducing signal from transcription to alternative splicing

D Auboeuf, E Batsché, M Dutertre, C Muchardt… - Trends in Endocrinology …, 2007 - cell.com
Cells respond to many external stimuli by modulating gene expression. A key step in this
regulation is the control of transcription, which determines the concentrations of pre-mRNA …

Pre‐mRNA splicing during transcription in the mammalian system

A Pandya‐Jones - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
Splicing of RNA polymerase II transcripts is a crucial step in gene expression and a key
generator of mRNA diversity. Splicing and transcription have generally been studied in …

Chromatin and alternative splicing

M Alló, IE Schor, MJ Munoz… - Cold Spring Harbor …, 2011 - symposium.cshlp.org
Alternative splicing affects more than 90% of human genes. Coupling between transcription
and splicing has become crucial in the complex network underlying alternative splicing …

Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing

N Fong, M Öhman, DL Bentley - Nature structural & molecular biology, 2009 - nature.com
We investigated whether a continuous transcript is necessary for co-transcriptional pre-
mRNA processing. Cutting an intron with the fast-cleaving hepatitis δ ribozyme, but not the …