Local protein structures
Protein structures are classically described as composed of two regular states, the α-helices
and the β-strands and one non-regular and variable state, the coil. Nonetheless, this simple …
and the β-strands and one non-regular and variable state, the coil. Nonetheless, this simple …
[HTML][HTML] Determinants of antigenicity and specificity in immune response for protein sequences
Background Target specific antibodies are pivotal for the design of vaccines,
immunodiagnostic tests, studies on proteomics for cancer biomarker discovery, identification …
immunodiagnostic tests, studies on proteomics for cancer biomarker discovery, identification …
[HTML][HTML] Providencia alcalifaciens—Assisted Bioremediation of Chromium-Contaminated Groundwater: A Computational Study
M Tasleem, WM Hussein, AAAA El-Sayed, A Alrehaily - Water, 2023 - mdpi.com
In Saudi Arabia, seawater desalination is the primary source of acquiring freshwater, and
groundwater contains a high concentration of toxic heavy metals. Chromium (Cr) is one of …
groundwater contains a high concentration of toxic heavy metals. Chromium (Cr) is one of …
Fold recognition by concurrent use of solvent accessibility and residue depth
Recognizing the structural similarity without significant sequence identity (called fold
recognition) is the key for bridging the gap between the number of known protein sequences …
recognition) is the key for bridging the gap between the number of known protein sequences …
Real‐SPINE: An integrated system of neural networks for real‐value prediction of protein structural properties
Proteins can move freely in three‐dimensional space. As a result, their structural properties,
such as solvent accessible surface area, backbone dihedral angles, and atomic distances …
such as solvent accessible surface area, backbone dihedral angles, and atomic distances …
[HTML][HTML] Prediction of protein secondary structure based on an improved channel attention and multiscale convolution module
X Jin, L Guo, Q Jiang, N Wu, S Yao - Frontiers in Bioengineering and …, 2022 - frontiersin.org
Prediction of the protein secondary structure is a key issue in protein science. Protein
secondary structure prediction (PSSP) aims to construct a function that can map the amino …
secondary structure prediction (PSSP) aims to construct a function that can map the amino …
Critical assessment of high-throughput standalone methods for secondary structure prediction
H Zhang, T Zhang, K Chen, KD Kedarisetti… - Briefings in …, 2011 - academic.oup.com
Sequence-based prediction of protein secondary structure (SS) enjoys wide-spread and
increasing use for the analysis and prediction of numerous structural and functional …
increasing use for the analysis and prediction of numerous structural and functional …
[HTML][HTML] A dynamic Bayesian network approach to protein secondary structure prediction
XQ Yao, H Zhu, ZS She - BMC bioinformatics, 2008 - Springer
Background Protein secondary structure prediction method based on probabilistic models
such as hidden Markov model (HMM) appeals to many because it provides meaningful …
such as hidden Markov model (HMM) appeals to many because it provides meaningful …
Real‐value prediction of backbone torsion angles
The backbone structure of a protein is largely determined by the ϕ and ψ torsion angles.
Thus, knowing these angles, even if approximately, will be very useful for protein‐structure …
Thus, knowing these angles, even if approximately, will be very useful for protein‐structure …
[HTML][HTML] DDIG-in: discriminating between disease-associated and neutral non-frameshifting micro-indels
Micro-indels (insertions or deletions shorter than 21 bps) constitute the second most
frequent class of human gene mutation after single nucleotide variants. Despite the relative …
frequent class of human gene mutation after single nucleotide variants. Despite the relative …