Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Natural pathways to polyploidy in plants and consequences for genome reorganization

A Tayalé, C Parisod - Cytogenetic and genome research, 2013 - karger.com
The last decade highlighted polyploidy as a rampant evolutionary process that triggers
drastic genome reorganization, but much remains to be understood about their causes and …

[HTML][HTML] Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

H Huang, C Shi, Y Liu, SY Mao, LZ Gao - BMC Evolutionary biology, 2014 - Springer
Background Camellia is an economically and phylogenetically important genus in the family
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …

[HTML][HTML] Transposon signatures of allopolyploid genome evolution

AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …

The population genetics of mutations: good, bad and indifferent

L Loewe, WG Hill - … Transactions of the Royal Society B …, 2010 - royalsocietypublishing.org
Population genetics is fundamental to our understanding of evolution, and mutations are
essential raw materials for evolution. In this introduction to more detailed papers that follow …

[HTML][HTML] Inferring the evolutionary mechanism of the chloroplast genome size by comparing whole-chloroplast genome sequences in seed plants

Z Xiao-Ming, W Junrui, F Li, L Sha, P Hongbo, Q Lan… - Scientific Reports, 2017 - nature.com
The chloroplast genome originated from photosynthetic organisms and has retained the
core genes that mainly encode components of photosynthesis. However, the causes of …

[HTML][HTML] Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny

Y Wu, F Liu, DG Yang, W Li, XJ Zhou, XY Pei… - Frontiers in Plant …, 2018 - frontiersin.org
Cotton is one of the most economically important fiber crop plants worldwide. The genus
Gossypium contains a single allotetraploid group (AD) and eight diploid genome groups (A …

Recent insights into mechanisms of genome size change in plants

CE Grover, JF Wendel - Journal of Botany, 2010 - Wiley Online Library
Genome sizes vary considerably across all eukaryotes and even among closely related
species. The genesis and evolutionary dynamics of that variation have generated …

Homoeologous nonreciprocal recombination in polyploid cotton

A Salmon, L Flagel, B Ying, JA Udall… - New …, 2010 - Wiley Online Library
Polyploid formation and processes that create partial genomic duplication generate
redundant genomic information, whose fate is of particular interest to evolutionary biologists …

Evolution and diversity of the cotton genome

G Hu, CE Grover, J Jareczek, D Yuan, Y Dong… - Cotton precision …, 2021 - Springer
We present an overview of Gossypium genome evolution and the implications of this
understanding for targeted breeding objectives. The cotton genus (Gossypium) contains …