Comparative genomics of an unusual biogeographic disjunction in the cotton tribe (Gossypieae) yields insights into genome downsizing

CE Grover, MA Arick, JL Conover… - Genome Biology and …, 2017 - academic.oup.com
Long-distance insular dispersal is associated with divergence and speciation because of
founder effects and strong genetic drift. The cotton tribe (Gossypieae) has experienced …

Dual domestication, diversity, and differential introgression in Old World cotton diploids

CE Grover, MA Arick, A Thrash… - Genome Biology and …, 2022 - academic.oup.com
Domestication in the cotton genus is remarkable in that it has occurred independently four
different times at two different ploidy levels. Relatively little is known about genome evolution …

Assessing the monophyly of polyploid Gossypium species

CE Grover, KK Grupp, RJ Wanzek… - Plant systematics and …, 2012 - Springer
The origin and monophyly of the polyploid cotton (Gossypium) species has been largely
accepted, despite the lack of explicit phylogenetic evidence. Recent studies in other …

Responses of transposable elements to polyploidy

C Parisod, N Senerchia - Plant transposable elements: impact on genome …, 2012 - Springer
Polyploidy (ie, hybridization between more or less divergent genomes, associated with
whole genome duplication) has been shown to result in drastic genome reorganization …

The genome size of clusterbean (Cyamopsis tetragonoloba) is significantly smaller compared to its wild relatives as estimated by flow cytometry

A Tyagi, P Sharma, S Saxena, R Sharma, SVA Mithra… - Gene, 2019 - Elsevier
Clusterbean (C. tetragonoloba) is an important, leguminous vegetable and industrial crop
with vast genetic diversity but meager genetic, cytological and genomic information. In the …

Retrotransposon molecular markers resolve cocoyam (Xanthosoma sagittifolium) and taro (Colocasia esculenta) by type and variety

O Doungous, R Kalendar, A Adiobo, AH Schulman - Euphytica, 2015 - Springer
Retrotransposon-based molecular markers were applied for the first time within the genera
Xanthosoma and Colocasia to assess intraspecific variability among 27 accessions of …

Development of InDel markers for the restorer gene Rf1 and assessment of their utility for marker-assisted selection in cotton

J Wu, M Zhang, X Zhang, L Guo, T Qi, H Wang, H Tang… - Euphytica, 2017 - Springer
The cytoplasmic male sterility (CMS) system is ideal for exploiting heterosis in crops such as
cotton. However, CMS-D2, which is based on Gossypium harknessii cytoplasm, is still not …

[HTML][HTML] Differential Dynamics of Transposable Elements during Long-Term Diploidization of Nicotiana Section Repandae (Solanaceae) Allopolyploid Genomes

C Parisod, C Mhiri, KY Lim, JJ Clarkson, MW Chase… - PLoS …, 2012 - journals.plos.org
Evidence accumulated over the last decade has shown that allopolyploid genomes may
undergo drastic reorganization. However, timing and mechanisms of structural diploidization …

[HTML][HTML] Comparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa

D Zong, P Gan, A Zhou, J Li, Z Xie, A Duan, C He - PloS one, 2019 - journals.plos.org
Populus tomentosa, of section Populus, is distributed mainly in northern China. This species
has high resistance to many diseases and insects, and it plays key roles in shelterbelts and …

Replication of nonautonomous retroelements in soybean appears to be both recent and common

A Wawrzynski, T Ashfield, NWG Chen… - Plant …, 2008 - academic.oup.com
Retrotransposons and their remnants often constitute more than 50% of higher plant
genomes. Although extensively studied in monocot crops such as maize (Zea mays) and …