CD8+ T cell states in human cancer: insights from single-cell analysis

AM Van der Leun, DS Thommen… - Nature Reviews …, 2020 - nature.com
The T cell infiltrates that are formed in human cancers are a modifier of natural disease
progression and also determine the probability of clinical response to cancer …

[HTML][HTML] Harnessing the potential of CAR-T cell therapy: progress, challenges, and future directions in hematological and solid tumor treatments

G Dagar, A Gupta, T Masoodi, S Nisar, M Merhi… - Journal of translational …, 2023 - Springer
Traditional cancer treatments use nonspecific drugs and monoclonal antibodies to target
tumor cells. Chimeric antigen receptor (CAR)-T cell therapy, however, leverages the immune …

The current landscape of single-cell transcriptomics for cancer immunotherapy

P Guruprasad, YG Lee, KH Kim, M Ruella - Journal of Experimental …, 2020 - rupress.org
Immunotherapies such as immune checkpoint blockade and adoptive cell transfer have
revolutionized cancer treatment, but further progress is hindered by our limited …

Single-cell omics analyses enabled by microchip technologies

Y Deng, A Finck, R Fan - Annual review of biomedical …, 2019 - annualreviews.org
Single-cell omics studies provide unique information regarding cellular heterogeneity at
various levels of the molecular biology central dogma. This knowledge facilitates a deeper …

[HTML][HTML] The whole body as the system in systems immunology

MML Poon, DL Farber - IScience, 2020 - cell.com
The human immune system is comprised of a diverse and interactive network of specialized
cells localized in diverse tissues throughout the body, where they mediate protection against …

Systems biology and big data in asthma and allergy: recent discoveries and emerging challenges

HHF Tang, PD Sly, PG Holt, KE Holt… - European Respiratory …, 2020 - Eur Respiratory Soc
Asthma is a common condition caused by immune and respiratory dysfunction, and it is often
linked to allergy. A systems perspective may prove helpful in unravelling the complexity of …

[HTML][HTML] A novel single-cell based method for breast cancer prognosis

X Li, L Liu, GJ Goodall, A Schreiber, T Xu… - PLoS computational …, 2020 - journals.plos.org
Breast cancer prognosis is challenging due to the heterogeneity of the disease. Various
computational methods using bulk RNA-seq data have been proposed for breast cancer …

[HTML][HTML] DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data

L Cheng, P Karkhanis, B Gokbag, Y Liu… - PLoS computational …, 2022 - journals.plos.org
Single-cell mass cytometry, also known as cytometry by time of flight (CyTOF) is a powerful
high-throughput technology that allows analysis of up to 50 protein markers per cell for the …

[HTML][HTML] Pinpointing cell identity in time and space

AF Savulescu, C Jacobs, Y Negishi… - Frontiers in Molecular …, 2020 - frontiersin.org
Mammalian cells display a broad spectrum of phenotypes, morphologies, and functional
niches within biological systems. Our understanding of mechanisms at the individual cellular …

Epigenetic gene regulation in plasma cells

DG Patterson, AK Kania, Z Zuo… - Immunological …, 2021 - Wiley Online Library
Humoral immunity provides protection from pathogenic infection and is mediated by
antibodies following the differentiation of naive B cells (nBs) to antibody‐secreting cells …