USP14-regulated allostery of the human proteasome by time-resolved cryo-EM

S Zhang, S Zou, D Yin, L Zhao, D Finley, Z Wu, Y Mao - Nature, 2022 - nature.com
Proteasomal degradation of ubiquitylated proteins is tightly regulated at multiple levels,–. A
primary regulatory checkpoint is the removal of ubiquitin chains from substrates by the …

Fast and effective prediction of the absolute binding free energies of covalent inhibitors of SARS-CoV-2 main protease and 20S proteasome

J Zhou, A Saha, Z Huang… - Journal of the American …, 2022 - ACS Publications
The COVID-19 pandemic has been a public health emergency with continuously evolving
deadly variants around the globe. Among many preventive and therapeutic strategies, the …

An empirical energy landscape reveals mechanism of proteasome in polypeptide translocation

R Fang, J Hon, M Zhou, Y Lu - Elife, 2022 - elifesciences.org
The ring-like ATPase complexes in the AAA+ family perform diverse cellular functions that
require coordination between the conformational transitions of their individual ATPase …

Energetic and structural insights behind calcium induced conformational transition in calmodulin

R Halder, A Warshel - Proteins: Structure, Function, and …, 2024 - Wiley Online Library
Calmodulin (CaM) is a key signaling protein that triggers several cellular and physiological
processes inside the cell. Upon binding with calcium ion, CaM undergoes large scale …

[HTML][HTML] Simulating the conformational dynamics of the ATPase complex on proteasome using its free-energy landscape

R Fang, Y Lu - STAR protocols, 2023 - Elsevier
The AAA+ ATPase complex on proteasome powers its functions through a series of intricate
conformational transitions. Here, we describe a procedure to simulate the conformational …

Mechanistic insights into dynamic mutual regulation of USP14 and proteasome

S Zhang, S Zou, D Yin, D Finley, Z Wu, Y Mao - bioRxiv, 2021 - biorxiv.org
Proteasomal degradation of ubiquitylated proteins is sophisticatedly regulated at multiple
levels–. A primary regulatory checkpoint is the removal of ubiquitin chains from substrates by …

Molecular Mechanism of AAA-ATPase Motor in the 26S Proteasome

S Zhang, Y Mao - Biomotors and their Nanobiotechnology …, 2023 - taylorfrancis.com
The ring-shaped hexameric AAA+ ATPase motors are the mechanochemical engines
powering all ATP-dependent proteolytic machines broadly involved in diverse cellular …

The Systems Biology of the Protein Quality Control

R Fang - 2023 - search.proquest.com
The 26S proteasome, an ATP-dependent protease, is the main powerhouse for protein
degradation in all eukaryotic cells. Proteostasis is maintained by the ubiquitin-proteasome …

[图书][B] Regulation of Proteasome Function and Quality Control by Short, Flexible Motifs in the Atpase Motor

JL Warnock - 2022 - search.proquest.com
The 26S proteasome is the largest and most complicated chambered protease known. It is
responsible for regulated degradation of proteins within all eukaryotic cells, and is essential …