Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking
HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …
developed rapidly into its own research field. Results of genomic prediction studies are often …
[PDF][PDF] Current status of genomic evaluation
Early application of genomic selection relied on SNP estimation with phenotypes or de-
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
[HTML][HTML] Using recursion to compute the inverse of the genomic relationship matrix
Computing the inverse of the genomic relationship matrix using recursion was investigated.
A traditional algorithm to invert the numerator relationship matrix is based on the observation …
A traditional algorithm to invert the numerator relationship matrix is based on the observation …
Comparison on genomic predictions using three GBLUP methods and two single-step blending methods in the Nordic Holstein population
H Gao, OF Christensen, P Madsen, US Nielsen… - Genetics Selection …, 2012 - Springer
Background A single-step blending approach allows genomic prediction using information
of genotyped and non-genotyped animals simultaneously. However, the combined …
of genotyped and non-genotyped animals simultaneously. However, the combined …
A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation
JM Hickey, BP Kinghorn, B Tier… - Genetics Selection …, 2012 - Springer
Background Efficient, robust, and accurate genotype imputation algorithms make large-scale
application of genomic selection cost effective. An algorithm that imputes alleles or allele …
application of genomic selection cost effective. An algorithm that imputes alleles or allele …
[HTML][HTML] Invited review: Advances and applications of random regression models: From quantitative genetics to genomics
An important goal in animal breeding is to improve longitudinal traits; that is, traits recorded
multiple times during an individual's lifetime or physiological cycle. Longitudinal traits were …
multiple times during an individual's lifetime or physiological cycle. Longitudinal traits were …
Unknown‐parent groups in single‐step genomic evaluation
In single‐step genomic evaluation using best linear unbiased prediction (ss GBLUP),
genomic predictions are calculated with a relationship matrix that combines pedigree and …
genomic predictions are calculated with a relationship matrix that combines pedigree and …
[HTML][HTML] Multibreed genomic evaluation for production traits of dairy cattle in the United States using single-step genomic best linear unbiased predictor
Official multibreed genomic evaluations for dairy cattle in the United States are based on
multibreed BLUP evaluation followed by single-breed estimation of SNP effects. Single-step …
multibreed BLUP evaluation followed by single-breed estimation of SNP effects. Single-step …
Changes in genetic parameters for fitness and growth traits in pigs under genomic selection
Genomic selection increases accuracy and decreases generation interval, speeding up
genetic changes in the populations. However, intensive changes caused by selection can …
genetic changes in the populations. However, intensive changes caused by selection can …
[PDF][PDF] Emerging issues in genomic selection
Genomic selection (GS) is now practiced successfully across many species. However, many
questions remain, such as long-term effects, estimations of genomic parameters, robustness …
questions remain, such as long-term effects, estimations of genomic parameters, robustness …