[HTML][HTML] Blending industrial blast furnace gas with H2 enables Acetobacterium woodii to efficiently co-utilize CO, CO2 and H2

K Novak, CS Neuendorf, I Kofler, N Kieberger… - Bioresource …, 2021 - Elsevier
In this study, the impact of gas composition (ie CO, CO 2 and H 2 partial pressures) on CO 2
utilization, growth, and acetate production was investigated in batch and continuous cultures …

[HTML][HTML] OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential …

O Hädicke, A von Kamp, T Aydogan… - PLoS computational …, 2018 - journals.plos.org
Constraint-based modeling techniques have become a standard tool for the in silico
analysis of metabolic networks. To further improve their accuracy, recent methodological …

Computational tools for metabolic engineering

WB Copeland, BA Bartley, D Chandran, M Galdzicki… - Metabolic …, 2012 - Elsevier
A great variety of software applications are now employed in the metabolic engineering field.
These applications have been created to support a wide range of experimental and analysis …

Cell density effect in the baculovirus‐insect cells system: A quantitative analysis of energetic metabolism

V Bernal, N Carinhas, AY Yokomizo… - Biotechnology and …, 2009 - Wiley Online Library
The cell density effect (ie, the drop in the specific productivity in the baculovirus‐insect cells
expression system when cells are infected at high cell densities) has been extensively …

Synergisms of machine learning and constraint‐based modeling of metabolism for analysis and optimization of fermentation parameters

MK Khaleghi, ISP Savizi, NE Lewis… - Biotechnology …, 2021 - Wiley Online Library
Recent noteworthy advances in developing high‐performing microbial and mammalian
strains have enabled the sustainable production of bio‐economically valuable substances …

Cooperative development of logical modelling standards and tools with CoLoMoTo

A Naldi, PT Monteiro, C Müssel… - …, 2015 - academic.oup.com
The identification of large regulatory and signalling networks involved in the control of
crucial cellular processes calls for proper modelling approaches. Indeed, models can help …

[HTML][HTML] Redox dependent metabolic shift in Clostridium autoethanogenum by extracellular electron supply

F Kracke, B Virdis, PV Bernhardt, K Rabaey… - Biotechnology for …, 2016 - Springer
Background Microbial electrosynthesis is a novel approach that aims at shifting the cellular
metabolism towards electron-dense target products by extracellular electron supply. Many …

[HTML][HTML] An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets

P Schneider, A von Kamp, S Klamt - PLoS computational biology, 2020 - journals.plos.org
The concept of minimal cut sets (MCS) provides a flexible framework for analyzing
properties of metabolic networks and for computing metabolic intervention strategies. In …

Designing biological systems: systems engineering meets synthetic biology

S Rollié, M Mangold, K Sundmacher - Chemical Engineering Science, 2012 - Elsevier
Synthetic Biology offers qualitatively new perspectives on the benefits of industrially
harnessed biological processes. The ability to modify and reprogramme natural biology …

[HTML][HTML] In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories

E Gruchattka, O Hädicke, S Klamt, V Schütz… - Microbial cell …, 2013 - Springer
Background Heterologous microbial production of rare plant terpenoids of medicinal or
industrial interest is attracting more and more attention but terpenoid yields are still low …