Microfluidics: reframing biological enquiry
The underlying physical properties of microfluidic tools have led to new biological insights
through the development of microsystems that can manipulate, mimic and measure biology …
through the development of microsystems that can manipulate, mimic and measure biology …
Elemental economy: microbial strategies for optimizing growth in the face of nutrient limitation
SS Merchant, JD Helmann - Advances in microbial physiology, 2012 - Elsevier
Microorganisms play a dominant role in the biogeochemical cycling of nutrients. They are
rightly praised for their facility for fixing both carbon and nitrogen into organic matter, and …
rightly praised for their facility for fixing both carbon and nitrogen into organic matter, and …
Ultrasensitive response motifs: basic amplifiers in molecular signalling networks
Multi-component signal transduction pathways and gene regulatory circuits underpin
integrated cellular responses to perturbations. A recurring set of network motifs serve as the …
integrated cellular responses to perturbations. A recurring set of network motifs serve as the …
Temporal and spatial oscillations in bacteria
P Lenz, L Søgaard-Andersen - Nature Reviews Microbiology, 2011 - nature.com
Oscillations pervade biological systems at all scales. In bacteria, oscillations control
fundamental processes, including gene expression, cell cycle progression, cell division …
fundamental processes, including gene expression, cell cycle progression, cell division …
Stochastic delay accelerates signaling in gene networks
K Josić, JM López, W Ott, LJ Shiau… - PLoS computational …, 2011 - journals.plos.org
The creation of protein from DNA is a dynamic process consisting of numerous reactions,
such as transcription, translation and protein folding. Each of these reactions is further …
such as transcription, translation and protein folding. Each of these reactions is further …
Transcriptional delay stabilizes bistable gene networks
Transcriptional delay can significantly impact the dynamics of gene networks. Here we
examine how such delay affects bistable systems. We investigate several stochastic models …
examine how such delay affects bistable systems. We investigate several stochastic models …
Iron acquisition and oxidative stress response in Aspergillus fumigatus
M Brandon, B Howard, C Lawrence… - BMC systems …, 2015 - Springer
Background Aspergillus fumigatus is a ubiquitous airborne fungal pathogen that presents a
life-threatening health risk to individuals with weakened immune systems. A. fumigatus …
life-threatening health risk to individuals with weakened immune systems. A. fumigatus …
Event timing at the single-cell level
E Yurkovsky, I Nachman - Briefings in functional genomics, 2013 - academic.oup.com
The timing of a cellular event often hides critical information on the process leading to the
event. Our ability to measure event times in single cells along with other quantities allow us …
event. Our ability to measure event times in single cells along with other quantities allow us …
Modeling delay in genetic networks: From delay birth-death processes to delay stochastic differential equations
Delay is an important and ubiquitous aspect of many biochemical processes. For example,
delay plays a central role in the dynamics of genetic regulatory networks as it stems from the …
delay plays a central role in the dynamics of genetic regulatory networks as it stems from the …
Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli
R Arbel-Goren, A Tal, B Parasar, A Dym… - Nucleic acids …, 2016 - academic.oup.com
Post-transcriptional regulatory processes may change transcript levels and affect cell-to-cell
variability or noise. We study small-RNA downregulation to elucidate its effects on noise in …
variability or noise. We study small-RNA downregulation to elucidate its effects on noise in …