Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance

HA Bowers, X Pochon, U von Ammon, N Gemmell… - Water, 2021 - mdpi.com
The field of eDNA is growing exponentially in response to the need for detecting rare and
invasive species for management and conservation decisions. Developing technologies and …

Environmental DNA surveys of African biodiversity: state of knowledge, challenges, and opportunities

S von der Heyden - Environmental DNA, 2023 - Wiley Online Library
Environmental DNA surveys have become a well‐established tool for detecting natural
communities, showing excellent promise for supporting biodiversity monitoring …

To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography

A Antich, C Palacin, OS Wangensteen, X Turon - BMC bioinformatics, 2021 - Springer
Background The recent blooming of metabarcoding applications to biodiversity studies
comes with some relevant methodological debates. One such issue concerns the treatment …

[HTML][HTML] Environmental DNA for biomonitoring

J Pawlowski, A Bonin, F Boyer, T Cordier… - Molecular …, 2021 - ncbi.nlm.nih.gov
The second series of papers concerns the use of eDNA to monitor fish diversity. We focus on
fish because they are among the most important groups of bioindicators and also because …

Environmental RNA as a tool for marine community biodiversity assessments

MS Giroux, JR Reichman, T Langknecht… - Scientific Reports, 2022 - nature.com
Microscopic organisms are often overlooked in traditional diversity assessments due to the
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …

Metabarcoding as a quantitative tool for estimating biodiversity and relative biomass of marine zooplankton

EA Ershova, OS Wangensteen… - ICES Journal of …, 2021 - academic.oup.com
Although metabarcoding is a well-established tool for describing diversity of pelagic
communities, its quantitative value is still controversial, with poor correlations previously …

Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications …

M Zhang, Y Zou, S Xiao, J Hou - Marine Pollution Bulletin, 2023 - Elsevier
Marine and freshwater biodiversity is under threat from both natural and manmade causes.
Biological monitoring is currently a top priority for biodiversity protection. Given present …

Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring

M Couton, L Lévêque, C Daguin-Thiébaut, T Comtet… - Biofouling, 2022 - Taylor & Francis
Marinas are high-priority targets for marine non-indigenous species (NIS), where they
compose a large portion of the biofouling communities. The practicality of water samples …

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

MI Brandt, F Pradillon, B Trouche, N Henry… - Scientific Reports, 2021 - nature.com
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …

Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates

S Duarte, BR Leite, MJ Feio, FO Costa, AF Filipe - Water, 2021 - mdpi.com
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …