Single-cell genomics meets human genetics

ASE Cuomo, A Nathan, S Raychaudhuri… - Nature Reviews …, 2023 - nature.com
Single-cell genomic technologies are revealing the cellular composition, identities and
states in tissues at unprecedented resolution. They have now scaled to the point that it is …

Single cell genomics as a transformative approach for aquaculture research and innovation

RR Daniels, RS Taylor, D Robledo… - Reviews in …, 2023 - Wiley Online Library
Single cell genomics encompasses a suite of rapidly maturing technologies that measure
the molecular profiles of individual cells within target samples. These approaches provide a …

[HTML][HTML] Systematic single-cell pathway analysis to characterize early T cell activation

JA Bibby, D Agarwal, T Freiwald, N Kunz, NS Merle… - Cell reports, 2022 - cell.com
Pathway analysis is a key analytical stage in the interpretation of omics data, providing a
powerful method for detecting alterations in cellular processes. We recently developed a …

Application of explainable artificial intelligence in the identification of Squamous Cell Carcinoma biomarkers

J Meena, Y Hasija - Computers in Biology and Medicine, 2022 - Elsevier
Non-melanoma skin cancers (NMSCs) are the fifth most common type of cancer worldwide,
affecting both men and women. Each year, more than a million new occurrences of NMSC …

CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data

CZI Single-Cell Biology, S Abdulla, B Aevermann… - BioRxiv, 2023 - biorxiv.org
Hundreds of millions of single cells have been analyzed to date using high throughput
transcriptomic methods, thanks to technological advances driving the increasingly rapid …

Cell-specific bioorthogonal tagging of glycoproteins

A Cioce, B Calle, T Rizou, SC Lowery… - Nature …, 2022 - nature.com
Altered glycoprotein expression is an undisputed corollary of cancer development.
Understanding these alterations is paramount but hampered by limitations underlying …

Asc-Seurat: analytical single-cell Seurat-based web application

WJ Pereira, FM Almeida, D Conde, KM Balmant… - BMC …, 2021 - Springer
Background Single-cell RNA sequencing (scRNA-seq) has revolutionized the study of
transcriptomes, arising as a powerful tool for discovering and characterizing cell types and …

Canine peripheral blood TCRαβ T cell atlas: Identification of diverse subsets including CD8A+ MAIT-like cells by combined single-cell transcriptome and V(D)J …

M Eschke, PF Moore, H Chang, G Alber… - Frontiers in …, 2023 - frontiersin.org
The dog is valued as a companion animal and increasingly recognized as a model for
human disorders. Given the importance of T cells in health and disease, comprehensive …

Leading the pack: Best practices in comparative canine cancer genomics to inform human oncology

CA London, H Gardner, S Zhao… - Veterinary and …, 2023 - Wiley Online Library
Pet dogs develop spontaneous cancers at a rate estimated to be five times higher than that
of humans, providing a unique opportunity to study disease biology and evaluate novel …

Single-cell gene expression analysis of cryopreserved equine bronchoalveolar cells

SE Sage, P Nicholson, LM Peters, T Leeb… - Frontiers in …, 2022 - frontiersin.org
The transcriptomic profile of a cell population can now be studied at the cellular level using
single-cell mRNA sequencing (scRNA-seq). This novel technique provides the …