Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Next-generation DNA sequencing methods

ER Mardis - Annu. Rev. Genomics Hum. Genet., 2008 - annualreviews.org
Recent scientific discoveries that resulted from the application of next-generation DNA
sequencing technologies highlight the striking impact of these massively parallel platforms …

Neandertal and Denisovan DNA from Pleistocene sediments

V Slon, C Hopfe, CL Weiß, F Mafessoni… - Science, 2017 - science.org
Although a rich record of Pleistocene human-associated archaeological assemblages
exists, the scarcity of hominin fossils often impedes the understanding of which hominins …

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

ME Allentoft, M Collins, D Harker… - … of the Royal …, 2012 - royalsocietypublishing.org
Claims of extreme survival of DNA have emphasized the need for reliable models of DNA
degradation through time. By analysing mitochondrial DNA (mtDNA) from 158 radiocarbon …

An integrated semiconductor device enabling non-optical genome sequencing

JM Rothberg, W Hinz, TM Rearick, J Schultz, W Mileski… - Nature, 2011 - nature.com
The seminal importance of DNA sequencing to the life sciences, biotechnology and
medicine has driven the search for more scalable and lower-cost solutions. Here we …

[图书][B] Processes of life: Essays in the philosophy of biology

J Dupré - 2012 - books.google.com
John Dupré explores recent revolutionary developments in biology and considers their
relevance for our understanding of human nature and human society. Epigenetics and …

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA

S Sawyer, J Krause, K Guschanski, V Savolainen… - PloS one, 2012 - journals.plos.org
DNA that survives in museum specimens, bones and other tissues recovered by
archaeologists is invariably fragmented and chemically modified. The extent to which such …

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

H Noguchi, J Park, T Takagi - Nucleic acids research, 2006 - academic.oup.com
Exhaustive gene identification is a fundamental goal in all metagenomics projects. However,
most metagenomic sequences are unassembled anonymous fragments, and conventional …

Patterns of damage in genomic DNA sequences from a Neandertal

AW Briggs, U Stenzel, PLF Johnson… - Proceedings of the …, 2007 - National Acad Sciences
High-throughput direct sequencing techniques have recently opened the possibility to
sequence genomes from Pleistocene organisms. Here we analyze DNA sequences …

Ancient DNA from European early neolithic farmers reveals their near eastern affinities

W Haak, O Balanovsky, JJ Sanchez, S Koshel… - PLoS …, 2010 - journals.plos.org
In Europe, the Neolithic transition (8,000–4,000 bc) from hunting and gathering to
agricultural communities was one of the most important demographic events since the initial …