Challenges in unsupervised clustering of single-cell RNA-seq data
Single-cell RNA sequencing (scRNA-seq) allows researchers to collect large catalogues
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …
Systems biology of cancer metastasis
Cancer metastasis is no longer viewed as a linear cascade of events but rather as a series
of concurrent, partially overlapping processes, as successfully metastasizing cells assume …
of concurrent, partially overlapping processes, as successfully metastasizing cells assume …
Spatial reconstruction of single enterocytes uncovers broad zonation along the intestinal villus axis
The intestinal epithelium is a highly structured tissue composed of repeating crypt-villus
units. Enterocytes perform the diverse tasks of absorbing a wide range of nutrients while …
units. Enterocytes perform the diverse tasks of absorbing a wide range of nutrients while …
A single cell atlas of the human liver tumor microenvironment
H Massalha, K Bahar Halpern… - Molecular systems …, 2020 - embopress.org
Malignant cell growth is fueled by interactions between tumor cells and the stromal cells
composing the tumor microenvironment. The human liver is a major site of tumors and …
composing the tumor microenvironment. The human liver is a major site of tumors and …
Computational oncology in the multi-omics era: state of the art
G de Anda-Jáuregui, E Hernández-Lemus - Frontiers in oncology, 2020 - frontiersin.org
Cancer is the quintessential complex disease. As technologies evolve faster each day, we
are able to quantify the different layers of biological elements that contribute to the …
are able to quantify the different layers of biological elements that contribute to the …
AI applications in renal pathology
The explosive growth of artificial intelligence (AI) technologies, especially deep learning
methods, has been translated at revolutionary speed to efforts in AI-assisted healthcare …
methods, has been translated at revolutionary speed to efforts in AI-assisted healthcare …
Placing RNA in context and space–methods for spatially resolved transcriptomics
C Strell, MM Hilscher, N Laxman, J Svedlund… - The FEBS …, 2019 - Wiley Online Library
Single‐cell transcriptomics provides us with completely new insights into the molecular
diversity of different cell types and the different states they can adopt. The technique …
diversity of different cell types and the different states they can adopt. The technique …
dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues
KR Maynard, M Tippani, Y Takahashi… - Nucleic acids …, 2020 - academic.oup.com
Multiplex single-molecule fluorescent in situ hybridization (smFISH) is a powerful method for
validating RNA sequencing and emerging spatial transcriptomic data, but quantification …
validating RNA sequencing and emerging spatial transcriptomic data, but quantification …
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
Spatial heterogeneity is a fundamental feature of the tumor microenvironment (TME), and
tackling spatial heterogeneity in neoplastic metabolic aberrations is critical for tumor …
tackling spatial heterogeneity in neoplastic metabolic aberrations is critical for tumor …
[HTML][HTML] High-dimensional immune-profiling in cancer: implications for immunotherapy
Immunotherapy is a rapidly growing field for cancer treatment. In contrast to conventional
cancer therapies, immunotherapeutic strategies focus on reactivating the immune system to …
cancer therapies, immunotherapeutic strategies focus on reactivating the immune system to …