Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource

M Kapun, JCB Nunez… - Molecular biology …, 2021 - academic.oup.com
Drosophila melanogaster is a leading model in population genetics and genomics, and a
growing number of whole-genome data sets from natural populations of this species have …

Climate‐specific biosynthetic gene clusters in populations of a lichen‐forming fungus

G Singh, A Calchera, M Schulz… - Environmental …, 2021 - Wiley Online Library
Natural products can contribute to abiotic stress tolerance in plants and fungi. We
hypothesize that biosynthetic gene clusters (BGCs), the genomic elements that underlie …

Divergent carry-over effects of hypoxia during the early development of abalone

Y Shen, Y Gan, Q Xiao, Z Huang, J Liu… - Environmental …, 2022 - ACS Publications
After being exposed to environmental stimuli during early developmental stages, some
organisms may gain or weaken physiological regulating abilities, which would have long …

The untapped potential of macrofossils in ancient plant DNA research

C Schwörer, M Leunda, N Alvarez, F Gugerli… - New …, 2022 - Wiley Online Library
The rapid development of ancient DNA analysis in the last decades has induced a paradigm
shift in ecology and evolution. Driven by a combination of breakthroughs in DNA isolation …

Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data

TA Delomas, SC Willis - BMC bioinformatics, 2023 - Springer
Background Microhaplotypes have the potential to be more cost-effective than SNPs for
applications that require genetic panels of highly variable loci. However, development of …

Monitoring rapid evolution of plant populations at scale with Pool-Sequencing

L Czech, Y Peng, JP Spence, PLM Lang, T Bellagio… - BioRxiv, 2022 - biorxiv.org
The change in allele frequencies within a population over time represents a fundamental
process of evolution. By monitoring allele frequencies, we can analyze the effects of natural …

Genomic architecture of phenotypic extremes in a wild cervid

SJ Anderson, SD Côté, JH Richard, ABA Shafer - BMC genomics, 2022 - Springer
Identifying the genes underlying fitness-related traits such as body size and male
ornamentation can provide tools for conservation and management and are often subject to …

Sampling strategies for genotyping common bean (Phaseolus vulgaris L.) Genebank accessions with DArTseq: a comparison of single plants, multiple plants, and …

M Correa Abondano, JA Ospina, P Wenzl… - Frontiers in Plant …, 2024 - frontiersin.org
Introduction Genotyping large-scale gene bank collections requires an appropriate sampling
strategy to represent the diversity within and between accessions. Methods A panel of 44 …

A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics. io

SN Bogan, J Johns, JS Griffiths… - Methods in Ecology …, 2023 - Wiley Online Library
Genomic methods are becoming increasingly valuable and established in ecological
research, particularly in nonmodel species. Supporting their progress and adoption requires …

A macroecological perspective on genetic diversity in the human gut microbiome

WR Shoemaker - PLoS One, 2023 - journals.plos.org
While the human gut microbiome has been intensely studied, we have yet to obtain a
sufficient understanding of the genetic diversity that it harbors. Research efforts have …