Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

Y Hu, J Chen, L Fang, Z Zhang, W Ma, Y Niu, L Ju… - Nature …, 2019 - nature.com
Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide.
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …

Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons

S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
Structural variations (SVs) have long been described as being involved in the origin,
adaption, and domestication of species. However, the underlying genetic and genomic …

Non–B-form DNA tends to form in centromeric regions and has undergone changes in polyploid oat subgenomes

Q Liu, C Yi, Z Zhang, H Su, C Liu… - Proceedings of the …, 2023 - National Acad Sciences
Centromeres are the specialized regions of the chromosomes that direct faithful
chromosome segregation during cell division. Despite their functional conservation …

Islands of retroelements are major components of Drosophila centromeres

CH Chang, A Chavan, J Palladino, X Wei… - PLoS …, 2019 - journals.plos.org
Centromeres are essential chromosomal regions that mediate kinetochore assembly and
spindle attachments during cell division. Despite their functional conservation, centromeres …

Genome of tetraploid sour cherry (Prunus cerasus L.)'Montmorency'identifies three distinct ancestral Prunus genomes

CZ Goeckeritz, KE Rhoades, KL Childs… - Horticulture …, 2023 - academic.oup.com
Sour cherry (Prunus cerasus L.) is a valuable fruit crop in the Rosaceae family and a hybrid
between progenitors closely related to extant Prunus fruticosa (ground cherry) and Prunus …

Sequencing a Juglans regia× J. microcarpa hybrid yields high-quality genome assemblies of parental species

T Zhu, L Wang, FM You, JC Rodriguez… - Horticulture …, 2019 - academic.oup.com
Members of the genus Juglans are monecious wind-pollinated trees in the family
Juglandaceae with highly heterozygous genomes, which greatly complicates genome …

High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres

X Chang, X He, J Li, Z Liu, R Pi, X Luo, R Wang… - Plant …, 2024 - cell.com
Centromere positioning and organization are crucial for genome evolution; however,
research on centromere biology is largely influenced by the quality of available genome …

Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …