Impact of transposable elements on polyploid plant genomes
CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …
Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton
Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide.
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …
Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons
S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
Structural variations (SVs) have long been described as being involved in the origin,
adaption, and domestication of species. However, the underlying genetic and genomic …
adaption, and domestication of species. However, the underlying genetic and genomic …
Non–B-form DNA tends to form in centromeric regions and has undergone changes in polyploid oat subgenomes
Q Liu, C Yi, Z Zhang, H Su, C Liu… - Proceedings of the …, 2023 - National Acad Sciences
Centromeres are the specialized regions of the chromosomes that direct faithful
chromosome segregation during cell division. Despite their functional conservation …
chromosome segregation during cell division. Despite their functional conservation …
Islands of retroelements are major components of Drosophila centromeres
Centromeres are essential chromosomal regions that mediate kinetochore assembly and
spindle attachments during cell division. Despite their functional conservation, centromeres …
spindle attachments during cell division. Despite their functional conservation, centromeres …
Genome of tetraploid sour cherry (Prunus cerasus L.)'Montmorency'identifies three distinct ancestral Prunus genomes
CZ Goeckeritz, KE Rhoades, KL Childs… - Horticulture …, 2023 - academic.oup.com
Sour cherry (Prunus cerasus L.) is a valuable fruit crop in the Rosaceae family and a hybrid
between progenitors closely related to extant Prunus fruticosa (ground cherry) and Prunus …
between progenitors closely related to extant Prunus fruticosa (ground cherry) and Prunus …
Sequencing a Juglans regia× J. microcarpa hybrid yields high-quality genome assemblies of parental species
Members of the genus Juglans are monecious wind-pollinated trees in the family
Juglandaceae with highly heterozygous genomes, which greatly complicates genome …
Juglandaceae with highly heterozygous genomes, which greatly complicates genome …
High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres
X Chang, X He, J Li, Z Liu, R Pi, X Luo, R Wang… - Plant …, 2024 - cell.com
Centromere positioning and organization are crucial for genome evolution; however,
research on centromere biology is largely influenced by the quality of available genome …
research on centromere biology is largely influenced by the quality of available genome …
Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …