Gene co-expression analysis for functional classification and gene–disease predictions
S Van Dam, U Vosa, A van der Graaf… - Briefings in …, 2018 - academic.oup.com
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …
biological processes, to prioritize candidate disease genes or to discern transcriptional …
CellBox: interpretable machine learning for perturbation biology with application to the design of cancer combination therapy
Systematic perturbation of cells followed by comprehensive measurements of molecular and
phenotypic responses provides informative data resources for constructing computational …
phenotypic responses provides informative data resources for constructing computational …
Germline genetic contribution to the immune landscape of cancer
Understanding the contribution of the host's genetic background to cancer immunity may
lead to improved stratification for immunotherapy and to the identification of novel …
lead to improved stratification for immunotherapy and to the identification of novel …
Insulin-like growth factor 1-induced enolase 2 deacetylation by HDAC3 promotes metastasis of pancreatic cancer
Y Zheng, C Wu, J Yang, Y Zhao, H Jia, M Xue… - Signal transduction and …, 2020 - nature.com
Abstract Enolase 2 (ENO2) is a key glycolytic enzyme in the metabolic process of glycolysis,
but its potential function in pancreatic ductal adenocarcinoma (PDAC) is unclear. In this …
but its potential function in pancreatic ductal adenocarcinoma (PDAC) is unclear. In this …
From Data to Cure: A Comprehensive Exploration of Multi-omics Data Analysis for Targeted Therapies
A Mukherjee, S Abraham, A Singh, S Balaji… - Molecular …, 2024 - Springer
In the dynamic landscape of targeted therapeutics, drug discovery has pivoted towards
understanding underlying disease mechanisms, placing a strong emphasis on molecular …
understanding underlying disease mechanisms, placing a strong emphasis on molecular …
Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses
ME MacGilvray, E Shishkova, M Place… - Journal of proteome …, 2020 - ACS Publications
To cope with sudden changes in the external environment, the budding yeast
Saccharomyces cerevisiae orchestrates a multifaceted response that spans many levels of …
Saccharomyces cerevisiae orchestrates a multifaceted response that spans many levels of …
Integrating network reconstruction with mechanistic modeling to predict cancer therapies
Signal transduction networks are often rewired in cancer cells. Identifying these alterations
will enable more effective cancer treatment. We developed a computational framework that …
will enable more effective cancer treatment. We developed a computational framework that …
[HTML][HTML] SLFN11 captures cancer-immunity interactions associated with platinum sensitivity in high-grade serous ovarian cancer
C Winkler, M King, J Berthe, D Ferraioli, A Garuti… - JCI insight, 2021 - ncbi.nlm.nih.gov
Large independent analyses on cancer cell lines followed by functional studies have
identified Schlafen 11 (SLFN11), a putative helicase, as the strongest predictor of sensitivity …
identified Schlafen 11 (SLFN11), a putative helicase, as the strongest predictor of sensitivity …
Master regulators connectivity map: a transcription factors-centered approach to drug repositioning
Drug discovery is a very expensive and time-consuming endeavor. Fortunately, recent omics
technologies and Systems Biology approaches introduced interesting new tools to achieve …
technologies and Systems Biology approaches introduced interesting new tools to achieve …