Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol

B Fan, C Wang, X Song, X Ding, L Wu, H Wu… - Frontiers in …, 2018 - frontiersin.org
Bacillus velezensis FZB42, the model strain for Gram-positive plant-growth-promoting and
biocontrol rhizobacteria, has been isolated in 1998 and sequenced in 2007. In order to …

Venn diagrams in bioinformatics

A Jia, L Xu, Y Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and
distinctions among multiple datasets, and a large number of programs have been developed …

Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species …

M Madhaiyan, JS Wirth… - International journal of …, 2020 - microbiologyresearch.org
Phylogenetic analyses based on 16S rRNA gene sequences of members of the family
Staphylococcaceae showed the presence of para-and polyphyletic genera. This finding …

AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential

M Alanjary, K Steinke, N Ziemert - Nucleic Acids Research, 2019 - academic.oup.com
Understanding the evolutionary background of a bacterial isolate has applications for a wide
range of research. However generating an accurate species phylogeny remains …

Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an “Operational Group B. amyloliquefaciens” within the B. subtilis Species Complex

B Fan, J Blom, HP Klenk, R Borriss - Frontiers in microbiology, 2017 - frontiersin.org
The plant growth promoting model bacterium FZB42T was proposed as the type strain of
Bacillus amyloliquefaciens subsp. plantarum (Borriss et al.,), but has been recently …

EDGAR3. 0: comparative genomics and phylogenomics on a scalable infrastructure

MA Dieckmann, S Beyvers… - Nucleic Acids …, 2021 - academic.oup.com
The EDGAR platform, a web server providing databases of precomputed orthology data for
thousands of microbial genomes, is one of the most established tools in the field of …

Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for …

P Estrada-de Los Santos, M Palmer… - Genes, 2018 - mdpi.com
Burkholderia sensu lato is a large and complex group, containing pathogenic,
phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of …

Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella …

JS Wirth, WB Whitman - International journal of systematic …, 2018 - microbiologyresearch.org
Roseobacters are a diverse and globally abundant group of Alphaproteobacteria within the
Rhodobacteraceae family. Recent studies and the cophenetic correlations suggest that the …

Recent Progress of Reclassification of the Genus Streptomyces

H Komaki - Microorganisms, 2023 - mdpi.com
The genus Streptomyces is a representative group of actinomycetes and one of the largest
taxa in bacteria, including approximately 700 species with validly published names. Since …

High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa

D Wibberg, M Stadler, C Lambert, B Bunk, C Spröer… - Fungal Diversity, 2021 - Springer
Abstract The Hypoxylaceae (Xylariales, Ascomycota) is a diverse family of mainly
saprotrophic fungi, which commonly occur in angiosperm-dominated forests around the …