Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …
The nuclear RNA exosome and its cofactors
M Schmid, TH Jensen - The biology of mRNA: structure and function, 2019 - Springer
The RNA exosome is a highly conserved ribonuclease endowed with 3′–5′ exonuclease
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …
mRNA recognition and packaging by the human transcription–export complex
B Pacheco-Fiallos, MK Vorländer, D Riabov-Bassat… - Nature, 2023 - nature.com
Newly made mRNAs are processed and packaged into mature ribonucleoprotein complexes
(mRNPs) and are recognized by the essential transcription–export complex (TREX) for …
(mRNPs) and are recognized by the essential transcription–export complex (TREX) for …
[HTML][HTML] Gene architecture and sequence composition underpin selective dependency of nuclear export of long RNAs on NXF1 and the TREX complex
The core components of the nuclear RNA export pathway are thought to be required for
export of virtually all polyadenylated RNAs. Here, we depleted different proteins that act in …
export of virtually all polyadenylated RNAs. Here, we depleted different proteins that act in …
[HTML][HTML] Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells
RNA concentration homeostasis involves coordinating RNA abundance and synthesis rates
with cell size. Here, we study this in human cells by combining genome-wide perturbations …
with cell size. Here, we study this in human cells by combining genome-wide perturbations …
ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts
JO Rouvière, A Salerno-Kochan, S Lykke-Andersen… - Molecular Cell, 2023 - cell.com
The RNA-binding ARS2 protein is centrally involved in both early RNA polymerase II
(RNAPII) transcription termination and transcript decay. Despite its essential nature, the …
(RNAPII) transcription termination and transcript decay. Despite its essential nature, the …
[HTML][HTML] Gene expression amplification by nuclear speckle association
J Kim, NC Venkata, GA Hernandez Gonzalez… - Journal of Cell …, 2020 - rupress.org
Many active genes reproducibly position near nuclear speckles, but the functional
significance of this positioning is unknown. Here we show that HSPA1B BAC transgenes …
significance of this positioning is unknown. Here we show that HSPA1B BAC transgenes …
[HTML][HTML] N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation
Summary N 6-Methyladenosine (m 6 A) on mRNAs mediates different biological processes
and its dysregulation contributes to tumorigenesis. How m 6 A dictates its diverse molecular …
and its dysregulation contributes to tumorigenesis. How m 6 A dictates its diverse molecular …
[HTML][HTML] ALYREF, a novel factor involved in breast carcinogenesis, acts through transcriptional and post-transcriptional mechanisms selectively regulating the short …
C Klec, E Knutsen, D Schwarzenbacher… - Cellular and Molecular …, 2022 - Springer
The RNA-binding protein ALYREF (THOC4) is involved in transcriptional regulation and
nuclear mRNA export, though its role and molecular mode of action in breast carcinogenesis …
nuclear mRNA export, though its role and molecular mode of action in breast carcinogenesis …
Oncogenic CDK13 mutations impede nuclear RNA surveillance
ML Insco, BJ Abraham, SJ Dubbury, IH Kaltheuner… - Science, 2023 - science.org
RNA surveillance pathways detect and degrade defective transcripts to ensure RNA fidelity.
We found that disrupted nuclear RNA surveillance is oncogenic. Cyclin-dependent kinase …
We found that disrupted nuclear RNA surveillance is oncogenic. Cyclin-dependent kinase …