Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery

L Nair, H Chung, U Basu - Nature reviews Molecular cell biology, 2020 - nature.com
Much of the mammalian genome is transcribed, generating long non-coding RNAs
(lncRNAs) that can undergo post-transcriptional surveillance whereby only a subset of the …

The nuclear RNA exosome and its cofactors

M Schmid, TH Jensen - The biology of mRNA: structure and function, 2019 - Springer
The RNA exosome is a highly conserved ribonuclease endowed with 3′–5′ exonuclease
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …

mRNA recognition and packaging by the human transcription–export complex

B Pacheco-Fiallos, MK Vorländer, D Riabov-Bassat… - Nature, 2023 - nature.com
Newly made mRNAs are processed and packaged into mature ribonucleoprotein complexes
(mRNPs) and are recognized by the essential transcription–export complex (TREX) for …

[HTML][HTML] Gene architecture and sequence composition underpin selective dependency of nuclear export of long RNAs on NXF1 and the TREX complex

B Zuckerman, M Ron, M Mikl, E Segal, I Ulitsky - Molecular Cell, 2020 - cell.com
The core components of the nuclear RNA export pathway are thought to be required for
export of virtually all polyadenylated RNAs. Here, we depleted different proteins that act in …

[HTML][HTML] Feedback from nuclear RNA on transcription promotes robust RNA concentration homeostasis in human cells

S Berry, M Müller, A Rai, L Pelkmans - Cell Systems, 2022 - cell.com
RNA concentration homeostasis involves coordinating RNA abundance and synthesis rates
with cell size. Here, we study this in human cells by combining genome-wide perturbations …

ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts

JO Rouvière, A Salerno-Kochan, S Lykke-Andersen… - Molecular Cell, 2023 - cell.com
The RNA-binding ARS2 protein is centrally involved in both early RNA polymerase II
(RNAPII) transcription termination and transcript decay. Despite its essential nature, the …

[HTML][HTML] Gene expression amplification by nuclear speckle association

J Kim, NC Venkata, GA Hernandez Gonzalez… - Journal of Cell …, 2020 - rupress.org
Many active genes reproducibly position near nuclear speckles, but the functional
significance of this positioning is unknown. Here we show that HSPA1B BAC transgenes …

[HTML][HTML] N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation

Y Cheng, W Xie, BF Pickering, KL Chu, AM Savino… - Cancer cell, 2021 - cell.com
Summary N 6-Methyladenosine (m 6 A) on mRNAs mediates different biological processes
and its dysregulation contributes to tumorigenesis. How m 6 A dictates its diverse molecular …

[HTML][HTML] ALYREF, a novel factor involved in breast carcinogenesis, acts through transcriptional and post-transcriptional mechanisms selectively regulating the short …

C Klec, E Knutsen, D Schwarzenbacher… - Cellular and Molecular …, 2022 - Springer
The RNA-binding protein ALYREF (THOC4) is involved in transcriptional regulation and
nuclear mRNA export, though its role and molecular mode of action in breast carcinogenesis …

Oncogenic CDK13 mutations impede nuclear RNA surveillance

ML Insco, BJ Abraham, SJ Dubbury, IH Kaltheuner… - Science, 2023 - science.org
RNA surveillance pathways detect and degrade defective transcripts to ensure RNA fidelity.
We found that disrupted nuclear RNA surveillance is oncogenic. Cyclin-dependent kinase …