Plasmid transfer by conjugation in Gram-negative bacteria: from the cellular to the community level

C Virolle, K Goldlust, S Djermoun, S Bigot, C Lesterlin - Genes, 2020 - mdpi.com
Bacterial conjugation, also referred to as bacterial sex, is a major horizontal gene transfer
mechanism through which DNA is transferred from a donor to a recipient bacterium by direct …

Structural and functional diversity of type IV secretion systems

TRD Costa, JB Patkowski, K Macé, PJ Christie… - Nature Reviews …, 2024 - nature.com
Considerable progress has been made in recent years in the structural and molecular
biology of type IV secretion systems in Gram-negative bacteria. The latest advances have …

[HTML][HTML] Z-form extracellular DNA is a structural component of the bacterial biofilm matrix

JR Buzzo, A Devaraj, ES Gloag, JA Jurcisek… - Cell, 2021 - cell.com
Biofilms are community architectures adopted by bacteria inclusive of a self-formed
extracellular matrix that protects resident bacteria from diverse environmental stresses and …

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

Chromosome organization in bacteria: mechanistic insights into genome structure and function

RT Dame, FZM Rashid, DC Grainger - Nature Reviews Genetics, 2020 - nature.com
Bacterial chromosomes are folded to compact DNA and facilitate cellular processes.
Studying model bacteria has revealed aspects of chromosome folding that are applicable to …

Cell biology and molecular basis of denitrification

WG Zumft - Microbiology and molecular biology reviews, 1997 - Am Soc Microbiol
Denitrification is a distinct means of energy conservation, making use of N oxides as
terminal electron acceptors for cellular bioenergetics under anaerobic, microaerophilic, and …

Origins of specificity in protein-DNA recognition

R Rohs, X Jin, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

3DNA: a software package for the analysis, rebuilding and visualization of three‐dimensional nucleic acid structures

XJ Lu, WK Olson - Nucleic acids research, 2003 - academic.oup.com
We present a comprehensive software package, 3DNA, for the analysis, reconstruction and
visualization of three‐dimensional nucleic acid structures. Starting from a coordinate file in …

Towards an integrated model of bacterial conjugation

E Cabezón, J Ripoll-Rozada, A Peña… - FEMS microbiology …, 2015 - academic.oup.com
Bacterial conjugation is one of the main mechanisms for horizontal gene transfer. It
constitutes a key element in the dissemination of antibiotic resistance and virulence genes to …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …