Non-B DNA structure-induced genetic instability and evolution

J Zhao, A Bacolla, G Wang, KM Vasquez - Cellular and molecular life …, 2010 - Springer
Repetitive DNA motifs are abundant in the genomes of various species and have the
capacity to adopt non-canonical (ie, non-B) DNA structures. Several non-B DNA structures …

Replication fork stalling at natural impediments

EV Mirkin, SM Mirkin - Microbiology and molecular biology …, 2007 - Am Soc Microbiol
Accurate and complete replication of the genome in every cell division is a prerequisite of
genomic stability. Thus, both prokaryotic and eukaryotic replication forks are extremely …

DNA triple helices: biological consequences and therapeutic potential

A Jain, G Wang, KM Vasquez - Biochimie, 2008 - Elsevier
DNA structure is a critical element in determining its function. The DNA molecule is capable
of adopting a variety of non-canonical structures, including three-stranded (ie triplex) …

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins

I Voineagu, V Narayanan… - Proceedings of the …, 2008 - National Acad Sciences
DNA inverted repeats (IRs) are hotspots of genomic instability in both prokaryotes and
eukaryotes. This feature is commonly attributed to their ability to fold into hairpin-or cruciform …

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

K Pfeifer-Sancar, A Mentz, C Rückert, J Kalinowski - BMC genomics, 2013 - Springer
Abstract Background The use of RNAseq to resolve the transcriptional organization of an
organism was established in recent years and also showed the complexity and dynamics of …

Potential in vivo roles of nucleic acid triple-helices

FA Buske, JS Mattick, TL Bailey - RNA biology, 2011 - Taylor & Francis
The ability of double-stranded DNA to form a triple-helical structure by hydrogen bonding
with a third strand is well established, but the biological functions of these structures remain …

Triple helix formation and the antigene strategy for sequence-specific control of gene expression

D Praseuth, AL Guieysse, C Helene - Biochimica et Biophysica Acta (BBA) …, 1999 - Elsevier
Specific gene expression involves the binding of natural ligands to the DNA base pairs.
Among the compounds rationally designed for artificial regulation of gene expression …

Stability prediction of canonical and non-canonical structures of nucleic acids in various molecular environments and cells

S Takahashi, N Sugimoto - Chemical Society Reviews, 2020 - pubs.rsc.org
Nucleic acids (DNA and RNA) dynamically fold and unfold to exert their functions in cells.
These folding and unfolding behaviours are also the basis for various technical applications …

DNA interstrand crosslink repair in mammalian cells: step by step

PA Muniandy, J Liu, A Majumdar, S Liu… - Critical reviews in …, 2010 - Taylor & Francis
Interstrand DNA crosslinks (ICLs) are formed by natural products of metabolism and by
chemotherapeutic reagents. Work in E. coli identified a two cycle repair scheme involving …

Chemical biology of non-canonical structures of nucleic acids for therapeutic applications

H Tateishi-Karimata, N Sugimoto - Chemical communications, 2020 - pubs.rsc.org
DNA forms not only the canonical duplex structure but also non-canonical structures. Most
potential sequences that induce the formation of non-canonical structures are present in …