The prevalence and evolutionary conservation of inverted repeats in proteobacteria
B Lavi, E Levy Karin, T Pupko… - Genome biology and …, 2018 - academic.oup.com
Perfect short inverted repeats (IRs) are known to be enriched in a variety of bacterial and
eukaryotic genomes. Currently, it is unclear whether perfect IRs are conserved over …
eukaryotic genomes. Currently, it is unclear whether perfect IRs are conserved over …
[HTML][HTML] Intramolecular folding in human ILPR fragment with three C-rich repeats
Enrichment of four tandem repeats of guanine (G) rich and cytosine (C) rich sequences in
functionally important regions of human genome forebodes the biological implications of …
functionally important regions of human genome forebodes the biological implications of …
[HTML][HTML] Long inverted repeats in eukaryotic genomes: recombinogenic motifs determine genomic plasticity
Inverted repeats are unstable motifs in a genome, having a causal relation to fragment
rearrangements and recombination events. We have investigated long inverted repeats …
rearrangements and recombination events. We have investigated long inverted repeats …
Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum
AP Tikhonov, JL Bennetzen, ZV Avramova - The Plant Cell, 2000 - academic.oup.com
Although a gene's location can greatly influence its expression, genome sequencing has
shown that orthologous genes may exist in very different environments in the genomes of …
shown that orthologous genes may exist in very different environments in the genomes of …
Relationship BetweenEscherichia coliGrowth and Deletions of CTGĚCAG Triplet Repeats in Plasmids
RP Bowater, WA Rosche, A Jaworski… - Journal of molecular …, 1996 - Elsevier
Instabilities that are intrinsic to natural repetitive DNA sequences produce high frequencies
of length changesin vivo. Triplet repeats cloned in plasmids inEscherichia coliundergo …
of length changesin vivo. Triplet repeats cloned in plasmids inEscherichia coliundergo …
[HTML][HTML] p53 Specifically Binds Triplex DNA In Vitro and in Cells
M Brázdová, V Tichý, R Helma, P Bažantová… - PLoS …, 2016 - journals.plos.org
Triplex DNA is implicated in a wide range of biological activities, including regulation of
gene expression and genomic instability leading to cancer. The tumor suppressor p53 is a …
gene expression and genomic instability leading to cancer. The tumor suppressor p53 is a …
Cloning and characterization of a novel sequence-specific single-stranded-DNA-binding protein
D Bayarsaihan, RJ Soto, LN Lukens - Biochemical Journal, 1998 - portlandpress.com
The promoter region of the chicken α2 (I) collagen gene contains a pyrimidine-rich element
that is well conserved in different mammalian species. This sequence can also form an …
that is well conserved in different mammalian species. This sequence can also form an …
XPD-dependent activation of apoptosis in response to triplex-induced DNA damage
M Kaushik Tiwari, FA Rogers - Nucleic acids research, 2013 - academic.oup.com
DNA sequences capable of forming triplexes are prevalent in the human genome and have
been found to be intrinsically mutagenic. Consequently, a balance between DNA repair and …
been found to be intrinsically mutagenic. Consequently, a balance between DNA repair and …
A dynamic programming algorithm for identification of triplex-forming sequences
M Lexa, T Martínek, I Burgetová, D Kopeček… - …, 2011 - academic.oup.com
Motivation: Current methods for identification of potential triplex-forming sequences in
genomes and similar sequence sets rely primarily on detecting homopurine and …
genomes and similar sequence sets rely primarily on detecting homopurine and …
Impact of intrinsic DNA structure on processing of plasmids for gene therapy and DNA vaccines
JR Cooke, EA McKie, JM Ward… - Journal of …, 2004 - Elsevier
Several non-Watson Crick DNA structures have been discovered to date, which may be
incorporated into future plasmid constructs for gene therapy and DNA vaccine products. In …
incorporated into future plasmid constructs for gene therapy and DNA vaccine products. In …