Structural polymorphism exhibited by a quasipalindrome present in the locus control region (LCR) of the human β-globin gene cluster

M Kaushik, S Kukreti - Nucleic acids research, 2006 - academic.oup.com
Structural polymorphism of DNA is a widely accepted property. A simple addition to this
perception has been our recent finding, where a single nucleotide polymorphism (SNP) site …

Substitution‐Inert Polynuclear Platinum Complexes That Inhibit the Activity of DNA Polymerase in Triplex‐Forming Templates

J Malina, NP Farrell, V Brabec - Angewandte Chemie, 2018 - Wiley Online Library
The formation of triple‐helical DNA is implicated in the regulation of gene expression. The
triplexes are, however, unstable under physiological conditions so that effective stabilizers …

[HTML][HTML] DNA: alternative conformations and biology

VN Potaman, RR Sinden - Madame Curie Bioscience Database …, 2013 - ncbi.nlm.nih.gov
Local structural transitions from the common B-DNA conformation into other DNA forms can
be functionally important. This chapter describes the structures of DNA forms called …

Comparative genomics study of inverted repeats in bacteria

F Lillo, S Basile, RN Mantegna - Bioinformatics, 2002 - academic.oup.com
Motivation: Comparative genomics provides a powerful way to investigate regularities and
differences observed at DNA level across species. Here we study the number and location …

Selective and robust stabilization of triplex DNA structures using cationic comb-type copolymers

A Yamayoshi, D Miyoshi, Y Zouzumi… - The Journal of …, 2017 - ACS Publications
DNA sequences capable of forming triplexes induce DNA double-strand breaks that have
attracted attention in genome editing technologies (eg, CRISPR/Cas9 system, TALEN, and …

An updated overview of experimental and computational approaches to identify non-canonical DNA/RNA structures with emphasis on G-quadruplexes and R-loops

X Shi, H Teng, Z Sun - Briefings in Bioinformatics, 2022 - academic.oup.com
Multiple types of non-canonical nucleic acid structures play essential roles in DNA
recombination and replication, transcription, and genomic instability and have been …

DNA major groove binders: triple helix-forming oligonucleotides, triple helix-specific DNA ligands and cleaving agents

C Escudé, JS Sun - DNA Binders and Related Subjects: -/-, 2005 - Springer
Nucleic acids are polymorphic macromolecules that can adopt a variety of single-, double-
and multi-stranded conformations, which in turn may provide important signals for regulating …

Searching genomes for sequences with the potential to form intrastrand triple helices

PR Hoyne, LM Edwards, A Viari, LJ Maher Iii - Journal of Molecular Biology, 2000 - Elsevier
The canonical double-helix form of DNA is thought to predominate both in dilute solution
and in living cells. Sequence-dependent fluctuations in local DNA shape occur within the …

Expansion of the (CTG)n repeat in the 5′-UTR of a reporter gene impedes translation

G Raca, EY Siyanova, CT McMurray… - Nucleic Acids …, 2000 - academic.oup.com
Abstract Effects of d (CAG) n· d (CTG) n repeats on expression of a reporter gene in human
cell culture were studied using transient transfection, RNase protection and coupled …

Functional studies of potential intrastrand triplex elements in the Escherichia coli genome

PR Hoyne, LJ Maher III - Journal of molecular biology, 2002 - Elsevier
We previously used a pattern recognition program for nucleic acids to detect sequences with
the potential to form intrastrand triplexes. Potential intrastrand triplex (PIT) element families …