[HTML][HTML] Interarm interaction of DNA cruciform forming at a short inverted repeat sequence

M Kato, S Hokabe, S Itakura, S Minoshima… - Biophysical journal, 2003 - cell.com
A novel interarm interaction of DNA cruciform forming at inverted repeat sequence was
characterized using an S1 nuclease digestion, permanganate oxidation, and microscopic …

Use of a linear multicopy vector based on the mini-replicon of temperate coliphage N15 for cloning DNA with abnormal secondary structures

NV Ravin, VK Ravin - Nucleic acids research, 1999 - academic.oup.com
A new cloning vector pN15L is described. It is a linear 13.8 kb plasmid based on the
coliphage N15 mini-replicon. The vector capacity exceeds 50 kb and the copy number is …

Formation of a combined H-DNA/Open TATA box structure in the promoter sequence of the human Na, K-ATPase α2 gene

VN Potaman, DW Ussery, RR Sinden - Journal of Biological Chemistry, 1996 - ASBMB
Structural variation of DNA within the promoter of the human Na, K-ATPase α2 gene, which
contains a 35-base pair (bp) homopyrimidine· homopurine (Py· Pu) tract adjacent to a TATA …

Computational approaches to predict the non-canonical DNAs

N Parveen, A Shamim, S Cho, KK Kim - Current Bioinformatics, 2019 - ingentaconnect.com
Background: Although most nucleotides in the genome form canonical double-stranded B-
DNA, many repeated sequences transiently present as non-canonical conformations (non-B …

Benzoquinoquinoxaline derivatives stabilize and cleave H-DNA and repress transcription downstream of a triplex-forming sequence

H Amiri, N Nekhotiaeva, JS Sun, CH Nguyen… - Journal of molecular …, 2005 - Elsevier
Oligopyrimidine• oligopurine sequences with potential to form intramolecular triple helix
structures (H-DNA) have been found mainly in high eukaryote genomes. However, the …

DNA: alternative conformations and biology

T Ohyama, VN Potaman, RR Sinden - DNA conformation and transcription, 2005 - Springer
Local structural transitions from the common B-DNA conformation into other DNA forms can
be functionally important. This chapter describes the structures of DNA forms called …

Rules for strand invasion by chemically modified oligonucleotides

T Ishihara, DR Corey - Journal of the American Chemical Society, 1999 - ACS Publications
Recognition of sequences within duplex DNA is a general strategy for probing DNA function
and for disrupting gene expression. Peptide nucleic acids (PNAs) and conjugates between …

Presence of Divalent Cation Is Not Mandatory for the Formation of Intramolecular Purine-Motif Triplex Containing Human c-jun Protooncogene Target

S Kaushik, M Kaushik, F Svinarchuk, C Malvy… - Biochemistry, 2011 - ACS Publications
Modulation of endogenous gene function, through sequence-specific recognition of double
helical DNA via oligonucleotide-directed triplex formation, is a promising approach …

Eukaryotic DNA replication

M Zannis‐Hadjopoulos, GB Price - Journal of Cellular …, 1999 - Wiley Online Library
One of the fundamental characteristics of life is the ability of an entity to reproduce itself,
which stems from the ability of the DNA molecule to replicate itself. The initiation step of DNA …

Effect of sequence-directed nucleosome disruption on cell-type-specific repression by α2/Mcm1 in the yeast genome

N Morohashi, Y Yamamoto, S Kuwana, W Morita… - Eukaryotic …, 2006 - Am Soc Microbiol
In Saccharomyces cerevisiae, a-cell-specific genes are repressed in MAT α cells by
α2/Mcm1, acting in concert with the Ssn6-Tup1 corepressors and the Isw2 chromatin …