Pan-genome analyses of metagenome-assembled genomes (MAGs) may suffer from the
known issues with MAGs: fragmentation, incompleteness and contamination. Here, we …

Microbial pangenome analysis identifies present or absent genes in prokaryotic genomes.
However, current tools are limited when analyzing species with higher sequence diversity or …

We present here FrangiPANe, a pipeline developed to build panreference using short reads
through a map-then-assemble strategy. Applying it to 248 African rice genomes using an …

Pangenomics was originally defined as the problem of comparing the composition of genes
into gene families within a set of bacterial isolates belonging to the same species. The …

泛基因组是近些年来基因组研究领域出现的一个新名词, 相较于单个线性参考基因组具有明显
优势, 能够有效解决参考基因组涵盖遗传信息有限的问题. 随着测序技术的发展和对基因组的 …

Pangenome analysis is a computational method for identifying genes that are present or
absent from a group of genomes, which helps to understand evolutionary relationships and …

Background Large scale metagenome assembly and binning to generate metagenome-
assembled genomes (MAGs) has become possible in the past five years. As a result …

Motivation Computational tools for pangenomic analysis have gained increasing interest
over the past two decades in various applications such as evolutionary studies and vaccine …

In this work we propose an approach to improve the performance of a current methodology,
computing k-mer based sequence similarity via Jaccard index, for pangenomic analyses …

Metagenomic assembly is often used in microbiome research. In metagenomic assembly,
contigs are binned based on the shared nucleotide composition. These contig bins are …