[HTML][HTML] Understanding bacteriophage tail fiber interaction with host surface receptor: the key “blueprint” for reprogramming phage host range
Bacteriophages (phages), as natural antibacterial agents, are being rediscovered because
of the growing threat of multi-and pan-drug-resistant bacterial pathogens globally. However …
of the growing threat of multi-and pan-drug-resistant bacterial pathogens globally. However …
[HTML][HTML] Microbiome-phage interactions in inflammatory bowel disease
S Federici, D Kviatcovsky, R Valdés-Mas… - Clinical microbiology and …, 2023 - Elsevier
Background Inflammatory bowel disease (IBD) constitutes a group of auto-inflammatory
disorders that impact the gastrointestinal tract and other systemic organs. The gut …
disorders that impact the gastrointestinal tract and other systemic organs. The gut …
[HTML][HTML] Resolving the structure of phage–bacteria interactions in the context of natural diversity
Microbial communities are shaped by viral predators. Yet, resolving which viruses (phages)
and bacteria are interacting is a major challenge in the context of natural levels of microbial …
and bacteria are interacting is a major challenge in the context of natural levels of microbial …
[HTML][HTML] PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations
Bacteriophages are viruses that infect bacteria or archaea. Understanding the diverse and
intricate genomic architectures of phages is essential to study microbial ecosystems and …
intricate genomic architectures of phages is essential to study microbial ecosystems and …
[HTML][HTML] Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages
R Barcia-Cruz, D Goudenège… - Nature …, 2024 - nature.com
Phage satellites are bacterial genetic elements that co-opt phage machinery for their own
dissemination. Here we identify a family of satellites, named Phage-Inducible Chromosomal …
dissemination. Here we identify a family of satellites, named Phage-Inducible Chromosomal …
[HTML][HTML] PhageLeads: rapid assessment of phage therapeutic suitability using an ensemble machine learning approach
The characterization of therapeutic phage genomes plays a crucial role in the success rate
of phage therapies. There are three checkpoints that need to be examined for the selection …
of phage therapies. There are three checkpoints that need to be examined for the selection …
[HTML][HTML] Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
Nowadays, bacteriophages are increasingly considered as an alternative treatment for a
variety of bacterial infections in cases where classical antibiotics have become ineffective …
variety of bacterial infections in cases where classical antibiotics have become ineffective …
Large language models improve annotation of prokaryotic viral proteins
Viral genomes are poorly annotated in metagenomic samples, representing an obstacle to
understanding viral diversity and function. Current annotation approaches rely on alignment …
understanding viral diversity and function. Current annotation approaches rely on alignment …
[HTML][HTML] Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes
Eukaryotic genomes are known to have garnered innovations from both archaeal and
bacterial domains but the sequence of events that led to the complex gene repertoire of …
bacterial domains but the sequence of events that led to the complex gene repertoire of …
Genomes of six viruses that infect Asgard archaea from deep-sea sediments
Asgard archaea are globally distributed prokaryotic microorganisms related to eukaryotes;
however, viruses that infect these organisms have not been described. Here, using …
however, viruses that infect these organisms have not been described. Here, using …