Tandem repeat variation in human and great ape populations and its impact on gene expression divergence

TB Sonay, T Carvalho, MD Robinson… - Genome …, 2015 - genome.cshlp.org
Tandem repeats (TRs) are stretches of DNA that are highly variable in length and mutate
rapidly. They are thus an important source of genetic variation. This variation is highly …

A generic, cost-effective, and scalable cell lineage analysis platform

T Biezuner, A Spiro, O Raz, S Amir, L Milo… - Genome …, 2016 - genome.cshlp.org
Advances in single-cell genomics enable commensurate improvements in methods for
uncovering lineage relations among individual cells. Current sequencing-based methods for …

Retrospective cell lineage reconstruction in humans by using short tandem repeats

L Tao, O Raz, Z Marx, MS Ghosh, S Huber… - Cell reports …, 2021 - cell.com
Cell lineage analysis aims to uncover the developmental history of an organism back to its
cell of origin. Recently, novel in vivo methods utilizing genome editing enabled important …

[HTML][HTML] CRISPR-Cas9 targeted enrichment and next-generation sequencing for mutation detection

M Malekshoar, SA Azimi, A Kaki, L Mousazadeh… - The Journal of Molecular …, 2023 - Elsevier
Despite the rapid application of next-generation sequencing (NGS) technologies, target
sequencing in regions of the genome is often required to diagnose many genetic diseases …

Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana

MO Press, RC McCoy, AN Hall, JM Akey… - Genome …, 2018 - genome.cshlp.org
Short tandem repeat (STR) mutations may comprise more than half of the mutations in
eukaryotic coding DNA, yet STR variation is rarely examined as a contributor to complex …

Challenges and approaches to genotyping repetitive DNA

EA Morton, AN Hall, E Kwan, C Mok… - G3: Genes …, 2020 - academic.oup.com
Individuals within a species can exhibit vast variation in copy number of repetitive DNA
elements. This variation may contribute to complex traits such as lifespan and disease, yet it …

The mechanism of transactivation regulation due to polymorphic short tandem repeats (STRs) using IGF1 promoter as a model

HY Chen, SL Ma, W Huang, L Ji, VHK Leung, H Jiang… - Scientific reports, 2016 - nature.com
Functional short tandem repeats (STR) are polymorphic in the population, and the number of
repeats regulates the expression of nearby genes (known as expression STR, eSTR). STR …

Genome scans for divergent selection in natural populations of the widespread hardwood species Eucalyptus grandis (Myrtaceae) using microsatellites

Z Song, M Zhang, F Li, Q Weng, C Zhou, M Li, J Li… - Scientific reports, 2016 - nature.com
Identification of loci or genes under natural selection is important for both understanding the
genetic basis of local adaptation and practical applications, and genome scans provide a …

An improved molecular inversion probe based targeted sequencing approach for low variant allele frequency

T Biezuner, Y Brilon, AB Arye, B Oron… - NAR genomics and …, 2022 - academic.oup.com
Deep targeted sequencing technologies are still not widely used in clinical practice due to
the complexity of the methods and their cost. The Molecular Inversion Probes (MIP) …

[HTML][HTML] From genome sequencing to the discovery of potential biomarkers in liver disease

S Oh, Y Jo, S Jung, S Yoon, KH Yoo - BMB reports, 2020 - ncbi.nlm.nih.gov
Chronic liver disease progresses through several stages, fatty liver, steatohepatitis, cirrhosis,
and eventually, it leads to hepatocellular carcinoma (HCC) over a long period of time. Since …