Virome–host interactions in intestinal health and disease

SU Seo, MN Kweon - Current opinion in virology, 2019 - Elsevier
The enteric virome consists largely of bacteriophages and prophages related to commensal
bacteria. Bacteriophages indirectly affect the host immune system by targeting their …

Towards an understanding of the avian virome

S François, OG Pybus - Journal of General Virology, 2020 - microbiologyresearch.org
The last two decades have seen the rise of viromics, the study of viral communities through
the detection and characterization of virus genome sequences. Here we systematically …

[HTML][HTML] Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome

MH Ansari, M Ebrahimi, MR Fattahi, MG Gardner… - BMC microbiology, 2020 - Springer
Background Changes in the enteric microbiota have been suggested to contribute to
gastrointestinal diseases, including irritable bowel syndrome. Most of the published work is …

Eukaryotic viruses in the fecal virome at the onset of type 1 diabetes: A study from four geographically distant African and Asian countries

O Cinek, L Kramna, R Odeh, A Alassaf… - Pediatric …, 2021 - Wiley Online Library
Objectives Studies of the fecal virome in type 1 diabetes (T1D) have been limited to
populations of Europe and the United States. We therefore sought to characterize the stool …

Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces

J Buigues, A Viñals, R Martínez-Recio… - Microbiology …, 2024 - journals.asm.org
Bats are natural hosts of multiple viruses, many of which have clear zoonotic potential. The
search for emerging viruses has been aided by the implementation of metagenomic tools …

[HTML][HTML] Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics

X Fernandez-Cassi, T Kohn - Food and Environmental Virology, 2024 - Springer
Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage.
However, more refined protocols are required for its effective use in disease surveillance. In …

Virus genotyping by massive parallel amplicon sequencing: adenovirus and enterovirus in the Norwegian MIDIA study

O Cinek, L Kramna, K Mazankova… - Journal of Medical …, 2019 - Wiley Online Library
Objectives Direct genotyping of adenovirus or enterovirus from clinical material using
polymerase chain reaction (PCR) followed by Sanger sequencing is often difficult due to the …

Treatments of porcine fecal samples affect high-throughput virome sequencing results

N Nantel-Fortier, M Gauthier, Y L'Homme… - Journal of Virological …, 2021 - Elsevier
The porcine enteric microbiota is currently extensively studied, taking advantage of
developments in high-throughput sequencing technologies. However, the viral part of the …

[PDF][PDF] 人体肠道病毒组的研究进展

王广洋, 鄢秋龙, 孙云亮 - 中国微生态学杂志, 2023 - cjm.dmu.edu.cn
人体肠道微生物包括细菌, 真菌, 古细菌和病毒等, 肠道病毒组的基因组约占肠道微生物总DNA
的5.8%, 病毒的数量在所有肠道微生物中排名第二, 且多样性高. 受高比例细菌基因组的影响 …

Protocol for faecal microbiota transplantation in irritable bowel syndrome: the MISCEAT study–a randomised, double-blind cross-over study using mixed microbiota …

J Hurych, J Vejmelka, L Hlinakova, L Kramna… - BMJ open, 2022 - bmjopen.bmj.com
Introduction Several studies have demonstrated dysbiosis in irritable bowel syndrome (IBS).
Therefore, faecal microbiota transplantation, whose effect and safety have been proven in …