30 years of nanobodies–an ongoing success story of small binders in biological research

DI Frecot, T Froehlich… - Journal of Cell Science, 2023 - journals.biologists.com
ABSTRACT A milestone in the field of recombinant binding molecules was achieved 30
years ago with the discovery of single-domain antibodies from which antigen-binding …

R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability

T Mosler, F Conte, GMC Longo, I Mikicic… - Nature …, 2021 - nature.com
Transcription poses a threat to genomic stability through the formation of R-loops that can
obstruct progression of replication forks. R-loops are three-stranded nucleic acid structures …

Next-generation mapping of the salicylic acid signaling hub and transcriptional cascade

J Powers, X Zhang, AV Reyes, R Zavaliev… - Molecular Plant, 2024 - cell.com
For over 60 years, salicylic acid (SA) has been known as a plant immune signal required for
basal and systemic acquired resistance (SAR). SA activates these immune responses by …

[HTML][HTML] Effects of sweet corncob polysaccharide on pancreatic protein expression in type 2 diabetic rats

X Wang, Z Wang, K Zhang, Y Ma, W Xiu - Journal of Functional Foods, 2022 - Elsevier
The cobs of sweet corn, also known as vegetable corn, are a nutritionally rich agricultural by-
product. Sweet corncob polysaccharide (SCP-80-I) is a bioactive macromolecule extracted …

DFF-ChIP: a method to detect and quantify complex interactions between RNA polymerase II, transcription factors, and chromatin

BM Spector, JF Santana, MA Pufall… - Nucleic acids …, 2024 - academic.oup.com
Recently, we introduced a chromatin immunoprecipitation (ChIP) technique utilizing the
human DNA Fragmentation Factor (DFF) to digest the DNA prior to immunoprecipitation …

greenCUT&RUN: Efficient genomic profiling of GFP‐tagged transcription factors and chromatin regulators

S Koidl, HTM Timmers - Current protocols, 2021 - Wiley Online Library
Genome‐wide mapping of transcription factors and chromatin regulators is important to
distinguish their direct from indirect effects on gene transcription or chromatin function. Novel …

Alternative mRNA splicing controls the functions of the histone H3K27 demethylase UTX/KDM6A

O Fotouhi, S Nizamuddin, S Falk, O Schilling… - Cancers, 2023 - mdpi.com
Simple Summary UTX/KDM6A is a histone H3K27 demethylase and plays an important role
in mammalian development and human diseases such as urothelial cancer. We identified a …

Multi-omics analyses of MEN1 missense mutations identify disruption of menin–MLL and menin–JunD interactions as critical requirements for molecular …

KMA Dreijerink, E Ozyerli-Goknar, S Koidl… - Epigenetics & …, 2022 - Springer
Background Loss-of-function mutations of the multiple endocrine neoplasia type 1 (MEN1)
gene are causal to the MEN1 tumor syndrome, but they are also commonly found in …

Clustered PHD domains in KMT2/MLL proteins are attracted by H3K4me3 and H3 acetylation-rich active promoters and enhancers

AM Stroynowska-Czerwinska, M Klimczak… - Cellular and Molecular …, 2023 - Springer
Histone lysine-specific methyltransferase 2 (KMT2A-D) proteins, alternatively called mixed
lineage leukemia (MLL1-4) proteins, mediate positive transcriptional memory. Acting as the …

Epigenetic-focused CRISPR/Cas9 screen identifies (absent, small, or homeotic) 2-like protein (ASH2L) as a regulator of glioblastoma cell survival

E Ozyerli-Goknar, EY Kala, AC Aksu, I Bulut… - Cell Communication and …, 2023 - Springer
Background Glioblastoma is the most common and aggressive primary brain tumor with
extremely poor prognosis, highlighting an urgent need for developing novel treatment …