Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity

SJ Clark, HJ Lee, SA Smallwood, G Kelsey, W Reik - Genome biology, 2016 - Springer
Emerging single-cell epigenomic methods are being developed with the exciting potential to
transform our knowledge of gene regulation. Here we review available techniques and …

Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

S Seisenberger, JR Peat, TA Hore… - … of the Royal …, 2013 - royalsocietypublishing.org
In mammalian development, epigenetic modifications, including DNA methylation patterns,
play a crucial role in defining cell fate but also represent epigenetic barriers that restrict …

Structural insight into substrate preference for TET-mediated oxidation

L Hu, J Lu, J Cheng, Q Rao, Z Li, H Hou, Z Lou… - Nature, 2015 - nature.com
DNA methylation is an important epigenetic modification,,. Ten-eleven translocation (TET)
proteins are involved in DNA demethylation through iteratively oxidizing 5-methylcytosine …

Epigenetic programming and reprogramming during development

I Cantone, AG Fisher - Nature structural & molecular biology, 2013 - nature.com
Cell identity is determined by specific gene expression patterns that are conveyed by
interactions between transcription factors and DNA in the context of chromatin. In …

Role of TET enzymes in DNA methylation, development, and cancer

KD Rasmussen, K Helin - Genes & development, 2016 - genesdev.cshlp.org
The pattern of DNA methylation at cytosine bases in the genome is tightly linked to gene
expression, and DNA methylation abnormalities are often observed in diseases. The ten …

[HTML][HTML] Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis

MA Hahn, R Qiu, X Wu, AX Li, H Zhang, J Wang, J Jui… - Cell reports, 2013 - cell.com
DNA methylation in mammals is highly dynamic during germ cell and preimplantation
development but is relatively static during the development of somatic tissues. 5 …

5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation

GC Hon, CX Song, T Du, F Jin, S Selvaraj, AY Lee… - Molecular cell, 2014 - cell.com
In mammals, cytosine methylation (5mC) is widely distributed throughout the genome but is
notably depleted from active promoters and enhancers. While the role of DNA methylation in …

Recent advances in the detection of base modifications using the Nanopore sequencer

L Xu, M Seki - Journal of human genetics, 2020 - nature.com
DNA and RNA modifications have important functions, including the regulation of gene
expression. Existing methods based on short-read sequencing for the detection of …

NANOG-dependent function of TET1 and TET2 in establishment of pluripotency

Y Costa, J Ding, TW Theunissen, F Faiola, TA Hore… - Nature, 2013 - nature.com
Molecular control of the pluripotent state is thought to reside in a core circuitry of master
transcription factors including the homeodomain-containing protein NANOG,, which has an …

[HTML][HTML] DNA methylation, its mediators and genome integrity

H Meng, Y Cao, J Qin, X Song, Q Zhang… - … journal of biological …, 2015 - ncbi.nlm.nih.gov
DNA methylation regulates many cellular processes, including embryonic development,
transcription, chromatin structure, X-chromosome inactivation, genomic imprinting and …