Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity
Emerging single-cell epigenomic methods are being developed with the exciting potential to
transform our knowledge of gene regulation. Here we review available techniques and …
transform our knowledge of gene regulation. Here we review available techniques and …
Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers
In mammalian development, epigenetic modifications, including DNA methylation patterns,
play a crucial role in defining cell fate but also represent epigenetic barriers that restrict …
play a crucial role in defining cell fate but also represent epigenetic barriers that restrict …
Structural insight into substrate preference for TET-mediated oxidation
DNA methylation is an important epigenetic modification,,. Ten-eleven translocation (TET)
proteins are involved in DNA demethylation through iteratively oxidizing 5-methylcytosine …
proteins are involved in DNA demethylation through iteratively oxidizing 5-methylcytosine …
Epigenetic programming and reprogramming during development
I Cantone, AG Fisher - Nature structural & molecular biology, 2013 - nature.com
Cell identity is determined by specific gene expression patterns that are conveyed by
interactions between transcription factors and DNA in the context of chromatin. In …
interactions between transcription factors and DNA in the context of chromatin. In …
Role of TET enzymes in DNA methylation, development, and cancer
KD Rasmussen, K Helin - Genes & development, 2016 - genesdev.cshlp.org
The pattern of DNA methylation at cytosine bases in the genome is tightly linked to gene
expression, and DNA methylation abnormalities are often observed in diseases. The ten …
expression, and DNA methylation abnormalities are often observed in diseases. The ten …
[HTML][HTML] Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis
DNA methylation in mammals is highly dynamic during germ cell and preimplantation
development but is relatively static during the development of somatic tissues. 5 …
development but is relatively static during the development of somatic tissues. 5 …
5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation
In mammals, cytosine methylation (5mC) is widely distributed throughout the genome but is
notably depleted from active promoters and enhancers. While the role of DNA methylation in …
notably depleted from active promoters and enhancers. While the role of DNA methylation in …
Recent advances in the detection of base modifications using the Nanopore sequencer
L Xu, M Seki - Journal of human genetics, 2020 - nature.com
DNA and RNA modifications have important functions, including the regulation of gene
expression. Existing methods based on short-read sequencing for the detection of …
expression. Existing methods based on short-read sequencing for the detection of …
NANOG-dependent function of TET1 and TET2 in establishment of pluripotency
Molecular control of the pluripotent state is thought to reside in a core circuitry of master
transcription factors including the homeodomain-containing protein NANOG,, which has an …
transcription factors including the homeodomain-containing protein NANOG,, which has an …
[HTML][HTML] DNA methylation, its mediators and genome integrity
H Meng, Y Cao, J Qin, X Song, Q Zhang… - … journal of biological …, 2015 - ncbi.nlm.nih.gov
DNA methylation regulates many cellular processes, including embryonic development,
transcription, chromatin structure, X-chromosome inactivation, genomic imprinting and …
transcription, chromatin structure, X-chromosome inactivation, genomic imprinting and …