Principles and methods of integrative genomic analyses in cancer
VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …
protein expression, point to biological functions and molecular pathways being deregulated …
A simple new approach to variable selection in regression, with application to genetic fine mapping
We introduce a simple new approach to variable selection in linear regression, with a
particular focus on quantifying uncertainty in which variables should be selected. The …
particular focus on quantifying uncertainty in which variables should be selected. The …
Statistical methods in integrative genomics
Statistical methods in integrative genomics aim to answer important biology questions by
jointly analyzing multiple types of genomic data (vertical integration) or aggregating the …
jointly analyzing multiple types of genomic data (vertical integration) or aggregating the …
Systems genetics identifies Sestrin 3 as a regulator of a proconvulsant gene network in human epileptic hippocampus
MR Johnson, J Behmoaras, L Bottolo… - Nature …, 2015 - nature.com
Gene-regulatory network analysis is a powerful approach to elucidate the molecular
processes and pathways underlying complex disease. Here we employ systems genetics …
processes and pathways underlying complex disease. Here we employ systems genetics …
Deciphering the complex: methodological overview of statistical models to derive OMICS‐based biomarkers
M Chadeau‐Hyam, G Campanella… - Environmental and …, 2013 - Wiley Online Library
Recent technological advances in molecular biology have given rise to numerous large‐
scale datasets whose analysis imposes serious methodological challenges mainly relating …
scale datasets whose analysis imposes serious methodological challenges mainly relating …
Joint high-dimensional Bayesian variable and covariance selection with an application to eQTL analysis
A Bhadra, BK Mallick - Biometrics, 2013 - academic.oup.com
We describe a Bayesian technique to (a) perform a sparse joint selection of significant
predictor variables and significant inverse covariance matrix elements of the response …
predictor variables and significant inverse covariance matrix elements of the response …
JAM: a scalable Bayesian framework for joint analysis of marginal SNP effects
PJ Newcombe, DV Conti… - Genetic epidemiology, 2016 - Wiley Online Library
Recently, large scale genome‐wide association study (GWAS) meta‐analyses have boosted
the number of known signals for some traits into the tens and hundreds. Typically, however …
the number of known signals for some traits into the tens and hundreds. Typically, however …
WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling
Cardiac fibrosis is a final common pathology in inherited and acquired heart diseases that
causes cardiac electrical and pump failure. Here, we use systems genetics to identify a pro …
causes cardiac electrical and pump failure. Here, we use systems genetics to identify a pro …
Dissection of a complex disease susceptibility region using a Bayesian stochastic search approach to fine mapping
Identification of candidate causal variants in regions associated with risk of common
diseases is complicated by linkage disequilibrium (LD) and multiple association signals …
diseases is complicated by linkage disequilibrium (LD) and multiple association signals …
Simultaneous grouping pursuit and feature selection over an undirected graph
In high-dimensional regression, grouping pursuit and feature selection have their own merits
while complementing each other in battling the curse of dimensionality. To seek a …
while complementing each other in battling the curse of dimensionality. To seek a …