Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas
D Hübschmann, K Kleinheinz, R Wagener… - Leukemia, 2021 - nature.com
B cells have the unique property to somatically alter their immunoglobulin (IG) genes by V
(D) J recombination, somatic hypermutation (SHM) and class-switch recombination (CSR) …
(D) J recombination, somatic hypermutation (SHM) and class-switch recombination (CSR) …
Deciphering the emerging complexities of molecular mechanisms at GWAS loci
ME Cannon, KL Mohlke - The American Journal of Human Genetics, 2018 - cell.com
Genome-wide association studies (GWASs) have identified thousands of loci associated
with hundreds of complex diseases and traits, and progress is being made toward …
with hundreds of complex diseases and traits, and progress is being made toward …
Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate
Whole genome bisulphite sequencing (WGBS) permits the genome-wide study of single
molecule methylation patterns. One of the key goals of mammalian cell-type identity studies …
molecule methylation patterns. One of the key goals of mammalian cell-type identity studies …
Regulatory variants: from detection to predicting impact
E Rojano, P Seoane, JAG Ranea… - Briefings in …, 2019 - academic.oup.com
Variants within non-coding genomic regions can greatly affect disease. In recent years,
increasing focus has been given to these variants, and how they can alter regulatory …
increasing focus has been given to these variants, and how they can alter regulatory …
An ATAC-seq atlas of chromatin accessibility in mouse tissues
Abstract The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is
a fundamental epigenomics approach and has been widely used in profiling the chromatin …
a fundamental epigenomics approach and has been widely used in profiling the chromatin …
Genomic data imputation with variational auto-encoders
Background As missing values are frequently present in genomic data, practical methods to
handle missing data are necessary for downstream analyses that require complete data …
handle missing data are necessary for downstream analyses that require complete data …
A meta-analysis of immune-cell fractions at high resolution reveals novel associations with common phenotypes and health outcomes
Background Changes in cell-type composition of tissues are associated with a wide range of
diseases and environmental risk factors and may be causally implicated in disease …
diseases and environmental risk factors and may be causally implicated in disease …
Epigenetics in eating disorders: a systematic review
Eating disorders are complex heritable conditions influenced by both genetic and
environmental factors. Given the progress of genomic discovery in anorexia nervosa, with …
environmental factors. Given the progress of genomic discovery in anorexia nervosa, with …
Antiviral treatment causes a unique mutational signature in cancers of transplantation recipients
Genetic instability is a major concern for successful application of stem cells in regenerative
medicine. However, the mutational consequences of the most applied stem cell therapy in …
medicine. However, the mutational consequences of the most applied stem cell therapy in …
Cell-type heterogeneity: Why we should adjust for it in epigenome and biomarker studies
L Qi, AE Teschendorff - Clinical Epigenetics, 2022 - Springer
Most studies aiming to identify epigenetic biomarkers do so from complex tissues that are
composed of many different cell-types. By definition, these cell-types vary substantially in …
composed of many different cell-types. By definition, these cell-types vary substantially in …