Intron retention and its impact on gene expression and protein diversity: A review and a practical guide

DF Grabski, L Broseus, B Kumari… - Wiley …, 2021 - Wiley Online Library
Intron retention (IR) occurs when a complete and unspliced intron remains in mature mRNA.
An increasing body of literature has demonstrated a major role for IR in numerous biological …

UPS writes a new saga of SAGA

P Barman, P Chakraborty, R Bhaumik… - Biochimica et Biophysica …, 2023 - Elsevier
Abstract SAGA (Spt-Ada-Gcn5-Acetyltransferase), an evolutionarily conserved
transcriptional co-activator among eukaryotes, is a large multi-subunit protein complex with …

Quantification and modeling of turnover dynamics of de novo transcripts in Drosophila melanogaster

A Grandchamp, P Czuppon… - Nucleic Acids …, 2024 - academic.oup.com
Most of the transcribed eukaryotic genomes are composed of non-coding transcripts. Among
these transcripts, some are newly transcribed when compared to outgroups and are referred …

ZWC complex-mediated SPT5 phosphorylation suppresses divergent antisense RNA transcription at active gene promoters

K Park, J Zhong, JS Jang, J Kim, HJ Kim… - Nucleic acids …, 2022 - academic.oup.com
The human genome encodes large numbers of non-coding RNAs, including divergent
antisense transcripts at transcription start sites (TSSs). However, molecular mechanisms by …

Revealing stage-specific expression patterns of long noncoding RNAs along mouse spermatogenesis

MF Trovero, R Rodríguez-Casuriaga, C Romeo… - RNA biology, 2020 - Taylor & Francis
The discovery of a large number of long noncoding RNAs (lncRNAs), and the finding that
they may play key roles in different biological processes, have started to provide a new …

Transcriptomics of meiosis in the male mouse

A Geisinger, R Rodríguez-Casuriaga… - Frontiers in cell and …, 2021 - frontiersin.org
Molecular studies of meiosis in mammals have been long relegated due to some intrinsic
obstacles, namely the impossibility to reproduce the process in vitro, and the difficulty to …

[HTML][HTML] Non-coding natural antisense transcripts: Analysis and application

JC Krappinger, L Bonstingl, K Pansy, K Sallinger… - Journal of …, 2021 - Elsevier
Non-coding natural antisense transcripts (ncNATs) are regulatory RNA sequences that are
transcribed in the opposite direction to protein-coding or non-coding transcripts. These …

Repeat RNA expansion disorders of the nervous system: post-transcriptional mechanisms and therapeutic strategies

JL Schwartz, KL Jones, GW Yeo - Critical reviews in biochemistry …, 2021 - Taylor & Francis
Dozens of incurable neurological disorders result from expansion of short repeat sequences
in both coding and non-coding regions of the transcriptome. Short repeat expansions …

Addiction-associated genetic variants implicate brain cell type-and region-specific cis-regulatory elements in addiction neurobiology

C Srinivasan, BDN Phan, AJ Lawler… - Journal of …, 2021 - Soc Neuroscience
Recent large genome-wide association studies have identified multiple confident risk loci
linked to addiction-associated behavioral traits. Most genetic variants linked to addiction …

[HTML][HTML] LncRNA SNHG16 promotes epithelial-mesenchymal transition by upregulating ITGA6 through miR-488 inhibition in osteosarcoma

J Bu, R Guo, XZ Xu, Y Luo, JF Liu - Journal of bone oncology, 2021 - Elsevier
Background Osteosarcoma is a primary cause of cancer-associated death in children and
adolescents worldwide. Long non-coding RNAs SNHG16 (lncRNA SNHG16) and integrin …