Helical coherence of DNA in crystals and solution

A Wynveen, DJ Lee, AA Kornyshev… - Nucleic acids …, 2008 - academic.oup.com
The twist, rise, slide, shift, tilt and roll between adjoining base pairs in DNA depend on the
identity of the bases. The resulting dependence of the double helix conformation on the …

The homology recognition well as an innate property of DNA structure

AA Kornyshev, A Wynveen - Proceedings of the National …, 2009 - National Acad Sciences
Mutual recognition of homologous sequences of DNA before strand exchange is considered
to be the most puzzling stage of recombination of genes. In 2001, a mechanism was …

Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging

AG Cherstvy, VB Teif - Journal of biological physics, 2013 - Springer
Chromatin domains formed in vivo are characterized by different types of 3D organization of
interconnected nucleosomes and architectural proteins. Here, we quantitatively test a …

Electrostatic braiding and homologous pairing of DNA double helices

R Cortini, AA Kornyshev, DJ Lee, S Leikin - Biophysical journal, 2011 - cell.com
Homologous pairing and braiding (supercoiling) have crucial effects on genome
organization, maintenance, and evolution. Generally, the pairing and braiding processes are …

Nucleic acid paranemic structures: a promising building block for functional nanomaterials in biomedical and bionanotechnological applications

JY Lee, Q Yang, X Chang, H Wisniewski… - Journal of Materials …, 2022 - pubs.rsc.org
Over the past few decades, DNA has been recognized as a powerful self-assembling
material capable of crafting supramolecular nanoarchitectures with quasi-angstrom …

Homologous pairing between long DNA double helices

AK Mazur - Physical Review Letters, 2016 - APS
Molecular recognition between two double stranded (ds) DNA with homologous sequences
may not seem compatible with the B-DNA structure because the sequence information is …

Mitochondrial-nuclear DNA interactions contribute to the regulation of nuclear transcript levels as part of the inter-organelle communication system

CDM Rodley, RS Grand, LR Gehlen, G Greyling… - PLoS …, 2012 - journals.plos.org
Nuclear and mitochondrial organelles must maintain a communication system. Loci on the
mitochondrial genome were recently reported to interact with nuclear loci. To determine …

Computational identification of ultra-conserved elements in the human genome: a hypothesis on homologous DNA pairing

ER Crossley, L Fedorova, OA Mulyar… - NAR Genomics and …, 2024 - academic.oup.com
Thousands of prolonged sequences of human ultra-conserved non-coding elements
(UCNEs) share only one common feature: peculiarities in the unique composition of their …

Biological complexity, quantum coherent states and the problem of efficient transmission of information inside a cell

AV Melkikh - BioSystems, 2013 - Elsevier
The intracellular channel of information transmission was analyzed from the point of view of
complexity. The most important steps in the transfer of information within a cell are the …

Relationship between the genome packing in the bacteriophage capsid and the kinetics of DNA ejection

M De Frutos, A Leforestier, F Livolant - Biophysical Reviews and …, 2014 - World Scientific
We present a general survey of experimental and theoretical observations of DNA structure
and in vitro ejection kinetics for different bacteriophage species. In some species, like T5, the …