Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties
Peptide binding to MHC is critical for antigen recognition by T-cells. To facilitate vaccine
design, computational methods have been developed for predicting MHC-binding peptides …
design, computational methods have been developed for predicting MHC-binding peptides …
Monoclonal antibodies specific for the empty conformation of HLA-DR1 reveal aspects of the conformational change associated with peptide binding
GJ Carven, S Chitta, I Hilgert, MM Rushe… - Journal of Biological …, 2004 - ASBMB
Class II major histocompatibility complex (MHC) proteins bind peptides and present them at
the cell surface for interaction with CD4+ T cells as part of the system by which the immune …
the cell surface for interaction with CD4+ T cells as part of the system by which the immune …
Probing the ligand-induced conformational change in HLA-DR1 by selective chemical modification and mass spectrometric mapping
GJ Carven, LJ Stern - Biochemistry, 2005 - ACS Publications
Peptide binding induces conformational changes in class II MHC proteins that have been
characterized using a variety of hydrodynamic and spectroscopic approaches, but these …
characterized using a variety of hydrodynamic and spectroscopic approaches, but these …
Human CD4+ T Cell Epitopes from Vaccinia Virus Induced by Vaccination or Infection
JM Calvo-Calle, I Strug, MD Nastke, SP Baker… - PLoS …, 2007 - journals.plos.org
Despite the importance of vaccinia virus in basic and applied immunology, our knowledge of
the human immune response directed against this virus is very limited. CD4+ T cell …
the human immune response directed against this virus is very limited. CD4+ T cell …
Development of an enrichment method for endogenous phosphopeptide characterization in human serum
G La Barbera, AL Capriotti, C Cavaliere… - Analytical and …, 2018 - Springer
The work describes the development of an enrichment method for the analysis of
endogenous phosphopeptides in serum. Endogenous peptides can play significant …
endogenous phosphopeptides in serum. Endogenous peptides can play significant …
Equilibrium and kinetic analysis of the unusual binding behavior of a highly immunogenic gluten peptide to HLA-DQ2
HLA-DQ2 predisposes an individual to celiac sprue by presenting peptides from dietary
gluten to intestinal CD4+ T cells. A selectively deamidated multivalent peptide from gluten …
gluten to intestinal CD4+ T cells. A selectively deamidated multivalent peptide from gluten …
Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: a molecular dynamics simulation study
R Yaneva, S Springer… - … : Original Research on …, 2009 - Wiley Online Library
Abstract Major histocompatibility (MHC) Class II cell surface proteins present antigenic
peptides to the immune system. Class II structures in complex with peptides but not in the …
peptides to the immune system. Class II structures in complex with peptides but not in the …
Major histocompatibility complex variation at class II DQA locus in the brown hare (Lepus europaeus)
EA Koutsogiannouli, KA Moutou, T Sarafidou… - Molecular …, 2009 - Wiley Online Library
The major histocompatability complex (MHC) is a multigene family of receptors that bind and
present antigenic peptides to T‐cells. Genes of the MHC are characterized by an …
present antigenic peptides to T‐cells. Genes of the MHC are characterized by an …
Mechanistic understanding and significance of small peptides interaction with MHC class II molecules for therapeutic applications
S Afridi, DC Hoessli, MW Hameed - Immunological Reviews, 2016 - Wiley Online Library
Major histocompatibility complex (MHC) class II molecules are expressed by antigen‐
presenting cells and stimulate CD 4+ T cells, which initiate humoral immune responses …
presenting cells and stimulate CD 4+ T cells, which initiate humoral immune responses …
Human leukocyte antigen-DQ alleles and haplotypes and their associations with resistance and susceptibility to HIV-1 infection
RA Hardie, M Luo, B Bruneau, E Knight… - Aids, 2008 - journals.lww.com
Objectives: To determine the association of DQ antigens with resistance and susceptibility to
HIV-1. Design: Despite repeated exposure to HIV-1, a subset of women in the Pumwani Sex …
HIV-1. Design: Despite repeated exposure to HIV-1, a subset of women in the Pumwani Sex …