Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor
X Zhang, HE Lou, V Gopalan, Z Liu, HM Jafarah, H Lei… - Cell reports, 2022 - cell.com
Loss-of-function mutations in the polycomb repressive complex 2 (PRC2) occur frequently in
malignant peripheral nerve sheath tumor, an aggressive sarcoma that arises from NF1 …
malignant peripheral nerve sheath tumor, an aggressive sarcoma that arises from NF1 …
The emerging role of Ras pathway signaling in pediatric cancer
As genomic sequencing has become more widely available, the high prevalence of Ras
pathway mutations in pediatric diseases has begun to emerge. Germline Ras-activating …
pathway mutations in pediatric diseases has begun to emerge. Germline Ras-activating …
Evidence of pioneer factor activity of an oncogenic fusion transcription factor
Recent characterizations of pioneer transcription factors provide insights into their structures
and patterns of chromatin recognition associated with their roles in cell fate commitment and …
and patterns of chromatin recognition associated with their roles in cell fate commitment and …
Recent advances in pediatric cancer research
TA McEachron, LJ Helman - Cancer research, 2021 - AACR
Over the past few years, the field of pediatric cancer has experienced a shift in momentum,
and this has led to new and exciting findings that have relevance beyond pediatric …
and this has led to new and exciting findings that have relevance beyond pediatric …
Genetic characterization, current model systems and prognostic stratification in PAX fusion-negative vs. PAX fusion-positive rhabdomyosarcoma
Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in children and
adolescents and accounts for approximately 2% of soft tissue sarcomas in adults. It is …
adolescents and accounts for approximately 2% of soft tissue sarcomas in adults. It is …
Integration of pan-cancer cell line and single-cell transcriptomic profiles enables inference of therapeutic vulnerabilities in heterogeneous tumors
Single-cell RNA sequencing (scRNA-seq) greatly advanced the understanding of
intratumoral heterogeneity by identifying distinct cancer cell subpopulations. However …
intratumoral heterogeneity by identifying distinct cancer cell subpopulations. However …
[HTML][HTML] Cancer cell-intrinsic expression of MHC II in lung cancer cell lines is actively restricted by MEK/ERK signaling and epigenetic mechanisms
AJ Neuwelt, AK Kimball, AM Johnson… - … for immunotherapy of …, 2020 - ncbi.nlm.nih.gov
Background Programmed death 1/programmed death ligand 1 (PD-1/PD-L1) targeted
immunotherapy affords clinical benefit in~ 20% of unselected patients with lung cancer. The …
immunotherapy affords clinical benefit in~ 20% of unselected patients with lung cancer. The …
[HTML][HTML] GATOR2-dependent mTORC1 activity is a therapeutic vulnerability in FOXO1 fusion–positive rhabdomyosarcoma
J Morales, DV Allegakoen, JA Garcia, K Kwong… - JCI insight, 2022 - ncbi.nlm.nih.gov
Oncogenic FOXO1 gene fusions drive a subset of rhabdomyosarcoma (RMS) with poor
survival; to date, these cancer drivers are therapeutically intractable. To identify new …
survival; to date, these cancer drivers are therapeutically intractable. To identify new …
Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP)
Methods developed to capture protein-anchored chromatin interactions (chromatin
interaction analysis by paired-end tag sequencing and HiChIP) have yielded tremendous …
interaction analysis by paired-end tag sequencing and HiChIP) have yielded tremendous …
3C methods in cancer research: recent advances and future prospects
I Yoon, U Kim, Y Song, T Park, DS Lee - Experimental & Molecular …, 2024 - nature.com
In recent years, Hi-C technology has revolutionized cancer research by elucidating the
mystery of three-dimensional chromatin organization and its role in gene regulation. This …
mystery of three-dimensional chromatin organization and its role in gene regulation. This …