Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor

X Zhang, HE Lou, V Gopalan, Z Liu, HM Jafarah, H Lei… - Cell reports, 2022 - cell.com
Loss-of-function mutations in the polycomb repressive complex 2 (PRC2) occur frequently in
malignant peripheral nerve sheath tumor, an aggressive sarcoma that arises from NF1 …

The emerging role of Ras pathway signaling in pediatric cancer

GM Ney, L McKay, C Koschmann, R Mody, Q Li - Cancer research, 2020 - AACR
As genomic sequencing has become more widely available, the high prevalence of Ras
pathway mutations in pediatric diseases has begun to emerge. Germline Ras-activating …

Evidence of pioneer factor activity of an oncogenic fusion transcription factor

BD Sunkel, M Wang, S LaHaye, BJ Kelly, JR Fitch… - IScience, 2021 - cell.com
Recent characterizations of pioneer transcription factors provide insights into their structures
and patterns of chromatin recognition associated with their roles in cell fate commitment and …

Recent advances in pediatric cancer research

TA McEachron, LJ Helman - Cancer research, 2021 - AACR
Over the past few years, the field of pediatric cancer has experienced a shift in momentum,
and this has led to new and exciting findings that have relevance beyond pediatric …

Genetic characterization, current model systems and prognostic stratification in PAX fusion-negative vs. PAX fusion-positive rhabdomyosarcoma

CA Dehner, AE Armstrong, M Yohe, JF Shern… - Genes, 2021 - mdpi.com
Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in children and
adolescents and accounts for approximately 2% of soft tissue sarcomas in adults. It is …

Integration of pan-cancer cell line and single-cell transcriptomic profiles enables inference of therapeutic vulnerabilities in heterogeneous tumors

W Zhang, D Maeser, A Lee, Y Huang, RF Gruener… - Cancer Research, 2024 - AACR
Single-cell RNA sequencing (scRNA-seq) greatly advanced the understanding of
intratumoral heterogeneity by identifying distinct cancer cell subpopulations. However …

[HTML][HTML] Cancer cell-intrinsic expression of MHC II in lung cancer cell lines is actively restricted by MEK/ERK signaling and epigenetic mechanisms

AJ Neuwelt, AK Kimball, AM Johnson… - … for immunotherapy of …, 2020 - ncbi.nlm.nih.gov
Background Programmed death 1/programmed death ligand 1 (PD-1/PD-L1) targeted
immunotherapy affords clinical benefit in~ 20% of unselected patients with lung cancer. The …

[HTML][HTML] GATOR2-dependent mTORC1 activity is a therapeutic vulnerability in FOXO1 fusion–positive rhabdomyosarcoma

J Morales, DV Allegakoen, JA Garcia, K Kwong… - JCI insight, 2022 - ncbi.nlm.nih.gov
Oncogenic FOXO1 gene fusions drive a subset of rhabdomyosarcoma (RMS) with poor
survival; to date, these cancer drivers are therapeutically intractable. To identify new …

Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP)

BE Gryder, J Khan, BZ Stanton - Nature protocols, 2020 - nature.com
Methods developed to capture protein-anchored chromatin interactions (chromatin
interaction analysis by paired-end tag sequencing and HiChIP) have yielded tremendous …

3C methods in cancer research: recent advances and future prospects

I Yoon, U Kim, Y Song, T Park, DS Lee - Experimental & Molecular …, 2024 - nature.com
In recent years, Hi-C technology has revolutionized cancer research by elucidating the
mystery of three-dimensional chromatin organization and its role in gene regulation. This …