Genome-scale rates of evolutionary change in bacteria

S Duchêne, KE Holt, FX Weill, S Le Hello… - Microbial …, 2016 - microbiologyresearch.org
Estimating the rates at which bacterial genomes evolve is critical to understanding major
evolutionary and ecological processes such as disease emergence, long-term host …

Helicobacter pylori treatment in the post-antibiotics era—searching for new drug targets

P Roszczenko-Jasińska, MI Wojtyś… - Applied Microbiology …, 2020 - Springer
Helicobacter pylori, a member of Epsilonproteobacteria, is a Gram-negative microaerophilic
bacterium that colonizes gastric mucosa of about 50% of the human population. Although …

Helicobacter pylori Virulence Factors Exploiting Gastric Colonization and its Pathogenicity

S Ansari, Y Yamaoka - Toxins, 2019 - mdpi.com
Helicobacter pylori colonizes the gastric epithelial cells of at least half of the world's
population, and it is the strongest risk factor for developing gastric complications like chronic …

A robust framework for microbial archaeology

C Warinner, A Herbig, A Mann… - Annual review of …, 2017 - annualreviews.org
Microbial archaeology is flourishing in the era of high-throughput sequencing, revealing the
agents behind devastating historical plagues, identifying the cryptic movements of …

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

SST Mak, S Gopalakrishnan, C Carøe, C Geng… - …, 2017 - academic.oup.com
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …

Helicobacter pylori infection causes both protective and deleterious effects in human health and disease

AK Miller, SM Williams - Genes & Immunity, 2021 - nature.com
Infection with Helicobacter pylori (H. pylori) is necessary but not sufficient for the
development of gastric cancer, the third leading cause of cancer death globally. H. pylori …

Helicobacter pylori in the Oral Cavity: Current Evidence and Potential Survival Strategies

L Zhang, X Chen, B Ren, X Zhou, L Cheng - International journal of …, 2022 - mdpi.com
Helicobacter pylori (H. pylori) is transmitted primarily through the oral–oral route and fecal–
oral route. The oral cavity had therefore been hypothesized as an extragastric reservoir of H …

Mining metagenomic data sets for ancient DNA: recommended protocols for authentication

FM Key, C Posth, J Krause, A Herbig, KI Bos - Trends in Genetics, 2017 - cell.com
While a comparatively young area of research, investigations relying on ancient DNA data
have been highly valuable in revealing snapshots of genetic variation in both the recent and …

The microbiota, immunoregulation, and mental health: implications for public health

CA Lowry, DG Smith, PH Siebler, D Schmidt… - Current environmental …, 2016 - Springer
Abstract The hygiene or “Old Friends” hypothesis proposes that the epidemic of
inflammatory disease in modern urban societies stems at least in part from reduced …

Helicobacter pylori modulates host cell responses by CagT4SS-dependent translocation of an intermediate metabolite of LPS inner core heptose biosynthesis

SC Stein, E Faber, SH Bats, T Murillo, Y Speidel… - PLoS …, 2017 - journals.plos.org
Highly virulent Helicobacter pylori cause proinflammatory signaling inducing the
transcriptional activation and secretion of cytokines such as IL-8 in epithelial cells …