[HTML][HTML] Achievements and challenges of genomics-assisted breeding in forest trees: From marker-assisted selection to genome editing
S Ahmar, P Ballesta, M Ali, F Mora-Poblete - International Journal of …, 2021 - mdpi.com
Forest tree breeding efforts have focused mainly on improving traits of economic importance,
selecting trees suited to new environments or generating trees that are more resilient to …
selecting trees suited to new environments or generating trees that are more resilient to …
Genomic landscape of the global oak phylogeny
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …
Studying the genetic basis of masting
The mechanisms underlying mast seeding have traditionally been studied by collecting long-
term observational data on seed crops and correlating seedfall with environmental …
term observational data on seed crops and correlating seedfall with environmental …
PANNZER—a practical tool for protein function prediction
The facility of next‐generation sequencing has led to an explosion of gene catalogs for
novel genomes, transcriptomes and metagenomes, which are functionally uncharacterized …
novel genomes, transcriptomes and metagenomes, which are functionally uncharacterized …
Chromosome‐scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata
WB Wang, XF He, XM Yan, B Ma, CF Lu, J Wu… - New …, 2023 - Wiley Online Library
Quercus dentata Thunb., a dominant forest tree species in northern China, has significant
ecological and ornamental value due to its adaptability and beautiful autumn coloration, with …
ecological and ornamental value due to its adaptability and beautiful autumn coloration, with …
[HTML][HTML] High-quality genome and methylomes illustrate features underlying evolutionary success of oaks
The genus Quercus, which emerged∼ 55 million years ago during globally warm
temperatures, diversified into∼ 450 extant species. We present a high-quality de novo …
temperatures, diversified into∼ 450 extant species. We present a high-quality de novo …
[HTML][HTML] A chromosome-level genome assembly of the Chinese cork oak (Quercus variabilis)
B Han, L Wang, Y Xian, XM Xie, WQ Li… - Frontiers in Plant …, 2022 - frontiersin.org
Quercus variabilis (Fagaceae) is an ecologically and economically important deciduous
broadleaved tree species native to and widespread in East Asia. It is a valuable woody …
broadleaved tree species native to and widespread in East Asia. It is a valuable woody …
[HTML][HTML] ContScout: sensitive detection and removal of contamination from annotated genomes
Contamination of genomes is an increasingly recognized problem affecting several
downstream applications, from comparative evolutionary genomics to metagenomics. Here …
downstream applications, from comparative evolutionary genomics to metagenomics. Here …
Hybrid de novo genome assembly of Chinese chestnut (Castanea mollissima)
Abstract Background The Chinese chestnut (Castanea mollissima) is widely cultivated in
China for nut production. This plant also plays an important ecological role in afforestation …
China for nut production. This plant also plays an important ecological role in afforestation …
A chromosome‐scale genome assembly of the Mongolian oak (Quercus mongolica)
W Ai, Y Liu, M Mei, X Zhang, E Tan… - Molecular Ecology …, 2022 - Wiley Online Library
Abstract Mongolian oak (Quercus mongolica Fisch.) is an ecologically and economically
important white oak species native to and widespread in the temperate zone of East Asia …
important white oak species native to and widespread in the temperate zone of East Asia …