Synthetic lethality and cancer

NJ O'Neil, ML Bailey, P Hieter - Nature Reviews Genetics, 2017 - nature.com
A synthetic lethal interaction occurs between two genes when the perturbation of either gene
alone is viable but the perturbation of both genes simultaneously results in the loss of …

Global genetic networks and the genotype-to-phenotype relationship

M Costanzo, E Kuzmin, J van Leeuwen, B Mair… - Cell, 2019 - cell.com
Genetic interactions identify combinations of genetic variants that impinge on phenotype.
With whole-genome sequence information available for thousands of individuals within a …

Integrative approaches for finding modular structure in biological networks

K Mitra, AR Carvunis, SK Ramesh, T Ideker - Nature Reviews Genetics, 2013 - nature.com
A central goal of systems biology is to elucidate the structural and functional architecture of
the cell. To this end, large and complex networks of molecular interactions are being rapidly …

Complex synthetic lethality in cancer

CJ Ryan, LPS Devakumar, SJ Pettitt, CJ Lord - Nature Genetics, 2023 - nature.com
The concept of synthetic lethality has been widely applied to identify therapeutic targets in
cancer, with varying degrees of success. The standard approach normally involves …

Mitochondria, energetics, epigenetics, and cellular responses to stress

DT Shaughnessy, K McAllister, L Worth… - Environmental …, 2014 - ehp.niehs.nih.gov
Background: Cells respond to environmental stressors through several key pathways,
including response to reactive oxygen species (ROS), nutrient and ATP sensing, DNA …

Environmental robustness of the global yeast genetic interaction network

M Costanzo, J Hou, V Messier, J Nelson, M Rahman… - Science, 2021 - science.org
INTRODUCTION Genetic interactions are identified when variants in different genes
combine to generate an unusual phenotype compared with the expected combined effect of …

[HTML][HTML] A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

R Srivas, JP Shen, CC Yang, SM Sun, J Li, AM Gross… - Molecular cell, 2016 - cell.com
An emerging therapeutic strategy for cancer is to induce selective lethality in a tumor by
exploiting interactions between its driving mutations and specific drug targets. Here we use …

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress

J Poli, CB Gerhold, A Tosi, N Hustedt… - Genes & …, 2016 - genesdev.cshlp.org
Little is known about how cells ensure DNA replication in the face of RNA polymerase II
(RNAPII)-mediated transcription, especially under conditions of replicative stress. Here we …

An RNA polymerase II-coupled function for histone H3K36 methylation in checkpoint activation and DSB repair

DK Jha, BD Strahl - Nature communications, 2014 - nature.com
Histone modifications are major determinants of DNA double-strand break (DSB) response
and repair. Here we elucidate a DSB repair function for transcription-coupled Set2 …

Single-cell and multivariate approaches in genetic perturbation screens

P Liberali, B Snijder, L Pelkmans - Nature Reviews Genetics, 2015 - nature.com
Large-scale genetic perturbation screens are a classical approach in biology and have been
crucial for many discoveries. New technologies can now provide unbiased quantification of …